PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 443461 | ||||||||
Common Name | SELMODRAFT_443461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 1387aa MW: 154399 Da PI: 9.07 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrd ++ + r++lg+f+taeeAa+a+++a+++l+g+ 443461 21 HFRGVRKRP-WGRYAAEIRDpWK----KVRVWLGTFDTAEEAARAYDNAARALRGA 71 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-30 | 20 | 77 | No hit | No description |
Pfam | PF00847 | 1.4E-11 | 21 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 21 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-30 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.589 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF64484 | 0 | 254 | 1383 | No hit | No description |
Gene3D | G3DSA:3.90.1100.10 | 4.4E-83 | 266 | 440 | No hit | No description |
Pfam | PF04563 | 3.4E-51 | 272 | 660 | IPR007644 | RNA polymerase, beta subunit, protrusion |
CDD | cd00653 | 0 | 273 | 1382 | IPR015712 | DNA-directed RNA polymerase, subunit 2 |
Pfam | PF04561 | 2.2E-23 | 442 | 620 | IPR007642 | RNA polymerase Rpb2, domain 2 |
Gene3D | G3DSA:3.90.1110.10 | 1.3E-50 | 443 | 609 | IPR007642 | RNA polymerase Rpb2, domain 2 |
Gene3D | G3DSA:3.90.1100.10 | 4.4E-83 | 610 | 760 | No hit | No description |
Pfam | PF04565 | 5.8E-10 | 696 | 749 | IPR007645 | RNA polymerase Rpb2, domain 3 |
Pfam | PF04566 | 2.4E-23 | 786 | 845 | IPR007646 | RNA polymerase Rpb2, domain 4 |
Pfam | PF04567 | 4.4E-14 | 868 | 908 | IPR007647 | RNA polymerase Rpb2, domain 5 |
Gene3D | G3DSA:3.90.1100.10 | 4.4E-83 | 910 | 985 | No hit | No description |
Pfam | PF00562 | 1.6E-121 | 915 | 1290 | IPR007120 | DNA-directed RNA polymerase, subunit 2, domain 6 |
Gene3D | G3DSA:2.40.270.10 | 5.1E-58 | 986 | 1000 | IPR007120 | DNA-directed RNA polymerase, subunit 2, domain 6 |
Gene3D | G3DSA:2.40.50.150 | 3.2E-25 | 1001 | 1131 | IPR014724 | RNA polymerase Rpb2, OB-fold |
Gene3D | G3DSA:2.40.270.10 | 5.1E-58 | 1132 | 1268 | IPR007120 | DNA-directed RNA polymerase, subunit 2, domain 6 |
PROSITE pattern | PS01166 | 0 | 1138 | 1150 | IPR007121 | RNA polymerase, beta subunit, conserved site |
Pfam | PF04560 | 7.5E-31 | 1292 | 1382 | IPR007641 | RNA polymerase Rpb2, domain 7 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009561 | Biological Process | megagametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity | ||||
GO:0032549 | Molecular Function | ribonucleoside binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1387 aa Download sequence Send to blast |
MAPRKGVAAA AAGKQQDQGA HFRGVRKRPW GRYAAEIRDP WKKVRVWLGT FDTAEEAARA 60 YDNAARALRG AKAKTNFSTM SPSLYPGGAG GGGGGGGGAG MGGGDDRQST SHSSTVESYN 120 TPTPVVKKNK AAVVAAAAAA AVDTMTMTIN NTSNCYTSSC GNHRAGMVEN GDFTKNVIAS 180 TVKNSNKRIF QPASHTLKDF KATAAICLYK EEEEEKITNP SPQHHKNTMR KSFFQEPRDY 240 LLTRRSYAGL DAPVKTAVDK FQLLPAFHKV RGLVKQHLDS YNYFVNCEIK KIIHAKGNEK 300 ITSDVDPNFY IKYACDTFQY FTNILFRFLD IFVGTPSIEQ DYIRQDITPQ QCRLRDMTYS 360 APISVDIEYT RGKDIITRKG KDGQGAQVIG RMPVMLRSSR CILTGKSDAE LAKLGECPLD 420 PGGYFVVKGT EKVILIQEQL SKNRIIIDSD STGSVTASVT SSTHERKSKT NIIIKHEKIY 480 VKLNVFSDDV PIVVVMKAMG MESDQEIIQM VGTDPKFAGI LAPSMQECAS LGVYTTHQAL 540 EYLGTKVRVN RQWGSKQTKS KVDEARDILL NVFLAHVAVH RYDFRPKCIY VALMLRRMLE 600 AILDKECVDD RDYVGNKRLE LAGQLLALLF EDLFKRSCSE LKSNVDRTLS KMNRASQYDV 660 SKSLKPDMLT SGLENAISSG NWTVKRFRMD KKGVTQVVSR LSYIAALGHM TRVASQFEKS 720 RKWGMLCPCD TPEGEGCGLT KNLALMTHIT TDDEEAPLID LCTNLGVEDI NLLSGEEFHS 780 KNAFLVMFNG TILGIHRRPQ QFATLMRKLR RAGKIGEFVS IFVNEKQRCI YIASDGGRVC 840 RPVVIADHGV SRIKEHHMKE LKDGFRTFDD FLREGLVEYL DVNEENNALI ALYEKEADST 900 TTHIEIEPFT ILGVCAGLIP YPHHNQSPRN TYQCAMGKQA MGNIAYNQLQ RIDTLLYLLV 960 YPQRPLLTTK SIELVNYDKL GAGQNASVAV MSYSGYDIED AIVMNKASLD RGFGRCIVLK 1020 KFSCLVRKYE NRTMDRIVAP RQHGHATSQL LDQDGIASVG ERIYDKDIFV NKESPKDVKT 1080 TFLNPLALPD SAYRPTPQRY KGPLGESAIV DKVLLTTNES QQMVIKCQVR HTRRPELGDK 1140 FSSRHGQKGV CGTIVEQQDF PFTERGVCPD LIMNPHGFPS RMTVGKMIEL LGGKAGVQSG 1200 KYHYGSAFGE PSGHADTVEA ISATLVKHGF SYCGKDLIYS GITGCPLQAY IYMGPIYYQK 1260 LKHMVLDKMH ARAQGPRVVL TRQPTEGRSR EGGLRLGEME RDCLVAYGSS MLILERLMIS 1320 SDQFQVQVCT NCGLLGYYSH KLKMNFCSYC KNGENMAAMK LPYACKLLFQ ELQSMNIVPR 1380 LQLAEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fj8_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2 |
5fj9_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2 |
5fja_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2 |
6cnb_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6cnc_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6cnd_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6cnf_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6eu0_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6eu1_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6eu2_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6eu3_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6f40_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6f41_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6f42_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
6f44_B | 0.0 | 223 | 1385 | 6 | 1145 | DNA-directed RNA polymerase III subunit RPC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and NRPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. {ECO:0000250|UniProtKB:P22276}.; FUNCTION: Essential for the completion of the three rounds of mitosis in female megaspores required for the development of mature gametophytes (PubMed:18723889). {ECO:0000269|PubMed:18723889}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024537768.1 | 0.0 | DNA-directed RNA polymerase III subunit 2 isoform X2 | ||||
Swissprot | F4KD38 | 0.0 | NRPC2_ARATH; DNA-directed RNA polymerase III subunit 2 | ||||
TrEMBL | D8S1N7 | 0.0 | D8S1N7_SELML; DNA-directed RNA polymerase subunit beta | ||||
STRING | EFJ21736 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-22 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | 443461 |
Entrez Gene | 9638767 |
Publications ? help Back to Top | |||
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