PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

443113

Common Name

SELMODRAFT_443113

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 513aa MW: 53851.7 Da PI: 7.9114

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
443113	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	428	479	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ + a + + +++L +AveY+k Lq 443113 428 SIAERVRRTRISERMRRLQELVPNmDKsLAVIQQTNTSDMLDEAVEYMKFLQ 479 689*******************9776788888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.735	422	478	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-14	425	494	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-10	426	482	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-14	427	499	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-7	428	479	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	428	484	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MGSKQQQQNP QLFQRLGNYN PHSSLATAAS FSSPNKKWML NAKNDVVEVA PDHLHHGYGD 60 QSQFQAINLS AQQQGFVGEC GRGGGGGGSG GSVLMRYNSA PSCLFSDLDQ IARSLNEAAA 120 ASAAAAPSAA NAPLFSPDVL PPLPSAMAAT SKKKIGSPTH SSSRYSAQSS TSLGMDFSVM 180 DHHHHHHRQQ QNGFTGLLTG TSSSTAAAIA KNTTATPSPS PPPANLTRQS SSPASLLSRL 240 EIDRQGLQHG SSEEDSPLEM RSPITDQEMM VASVSGAMDL GAVSSVDCGF WDGSSAAAMA 300 VHPAAAHHAA AAAAAAAQQQ LHGSVFMGNG NLDQGGRKRI RDVDMDMLDA ALDHSSSSGG 360 GGGGGGGGGG GGHQQQQQQQ HHTLTRHLSL PISTGRSSGG LLAAENLLQD SVPCRLRAKR 420 GCATHPRSIA ERVRRTRISE RMRRLQELVP NMDKSLAVIQ QTNTSDMLDE AVEYMKFLQK 480 QVDDLQECRE KCQGLCKMSQ QQGKTASNGS QH*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MGSKQQQQNP QLFQRLGNYN PHSSLATAAS FSSPNKKWML NAKNDVVEVA PDHLHHGYGD  60
QSQFQAINLS AQQQGFVGEC GRGGGGGGSG GSVLMRYNSA PSCLFSDLDQ IARSLNEAAA  120
ASAAAAPSAA NAPLFSPDVL PPLPSAMAAT SKKKIGSPTH SSSRYSAQSS TSLGMDFSVM  180
DHHHHHHRQQ QNGFTGLLTG TSSSTAAAIA KNTTATPSPS PPPANLTRQS SSPASLLSRL  240
EIDRQGLQHG SSEEDSPLEM RSPITDQEMM VASVSGAMDL GAVSSVDCGF WDGSSAAAMA  300
VHPAAAHHAA AAAAAAAQQQ LHGSVFMGNG NLDQGGRKRI RDVDMDMLDA ALDHSSSSGG  360
GGGGGGGGGG GGHQQQQQQQ HHTLTRHLSL PISTGRSSGG LLAAENLLQD SVPCRLRAKR  420
GCATHPRSIA ERVRRTRISE RMRRLQELVP NMDKSLAVIQ QTNTSDMLDE AVEYMKFLQK  480
QVDDLQECRE KCQGLCKMSQ QQGKTASNGS QH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537027.1	0.0	transcription factor bHLH122 isoform X1
TrEMBL	D8RYP6	0.0	D8RYP6_SELML; Uncharacterized protein
STRING	EFJ22469	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP511	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	6e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	443113
Entrez Gene	9648674

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]