PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 441930
Common NameSELMODRAFT_441930
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family G2-like
Protein Properties Length: 458aa    MW: 49540.6 Da    PI: 9.9251
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
441930genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31265318255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
   441930 265 PRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 318
              9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15262318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28263318IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23265318IPR006447Myb domain, plants
PfamPF002499.1E-7266317IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEISNAAAAP ALLLPDLSLQ ISPPCSTSKA APSPAASSGL TDHQLWTTTR PLSSSSGTVE  60
LSKSSPPRSS INSAASSSLA SDNSSSNSSG GETSIQLSLG SRYFNALGGA DKNRPVGADD  120
AERKPSKVPL FGEDRSFSSR LDSTDSKAEQ HKASFVQFSS SCSTSHHHRQ QQLQQVLQRY  180
SSPAMMNLYQ SGFSSVRMSN GAVAPPPPTT TTTTRDGSLS ALFDASSSSC GSSVPTPLIA  240
GNAATSSLRS RYISKFPVKR NVRAPRMRWT STLHAHFVHA VELLGGHERA TPKSVLELMN  300
VKDLTLAHVK SHLQMYRTVK TTDKSASTDH VSSVEMRKMD DPKLMQWKPE AVQPRYSDEP  360
ALQSRCPRSQ EVVPRPSFSD GLWQQHMKQT SHGAMKIEDG LQQRQFSATT LSQLMSSRMS  420
HMIPKVPSLE FTLGRPGYHL AEHSEAPPPQ ELLLLRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16266320357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16266320357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16266320357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16266320357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16266320458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972709.10.0probable transcription factor KAN2
TrEMBLD8RNV10.0D8RNV1_SELML; Uncharacterized protein
STRINGEFJ259300.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-44G2-like family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]