PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

441386

Common Name

SELMODRAFT_441386

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 533aa MW: 59994.8 Da PI: 8.6319

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
441386	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.4	2.7e-11	118	227	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......................rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 W+ + + +L+++ re+ +++ ++ ++ Wee ++ + +++ + +++kqC k++nl+++yk +ke+ + + sss 441386 118 WSTHATSVLLDVFREKRLAINGRNFRGEEWEELASSVnercyaitppnssnlttiatasnSSKELWKNAKQCSYKMSNLKRKYKSEKEMIQLTgSLSSSSG 218 ****************************************************************************************99856677788 PP trihelix 79 cpyfdqlea 87 +++f+++ea 441386 219 WQWFSKMEA 227 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-10	117	228	No hit	No description
Pfam	PF04949	2.6E-7	367	423	IPR007033	RAB6-interacting golgin

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MAGILTRNAY FLRYVYLGSE LRVHISSSTT PQQDPPPPSF SLMKNGEVDV DDDEDDQEQQ 60 EKQQPRSLSD QNLSQQQQQQ QRQHDHHAEQ QLEQLNKSSD AIADQADSKE GSKDAGSWST 120 HATSVLLDVF REKRLAINGR NFRGEEWEEL ASSVNERCYA ITPPNSSNLT TIATASNSSK 180 ELWKNAKQCS YKMSNLKRKY KSEKEMIQLT GSLSSSSGWQ WFSKMEAIFG SDPKYATFSS 240 GISSGSELAL HASKGDLIVD AVAGATDEEI FGANNKVVVI NSTDKRILRN NSFDPGVLLP 300 PSKSASTNNL DGSSPSTDPR RETAAESSPR EFYTTTSKHS HSKKKLCVIN SGQIPAAGDP 360 ESSEFGARRD LLDLKSRIDA ADMELVYLKQ LCESKEKELK DAMQVYEDKN KYRNELVRSL 420 WRVFTRKRYR RCGGDNTISH RLGGRSAHDL MNESLSRKEK KSSSGDQKRK KQRAVLAGSN 480 RAELRLLWVY DFRDEHKTKG PPLITKDRHS DLQFLHLNVQ HTSFLMILRE SF*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MAGILTRNAY FLRYVYLGSE LRVHISSSTT PQQDPPPPSF SLMKNGEVDV DDDEDDQEQQ  60
EKQQPRSLSD QNLSQQQQQQ QRQHDHHAEQ QLEQLNKSSD AIADQADSKE GSKDAGSWST  120
HATSVLLDVF REKRLAINGR NFRGEEWEEL ASSVNERCYA ITPPNSSNLT TIATASNSSK  180
ELWKNAKQCS YKMSNLKRKY KSEKEMIQLT GSLSSSSGWQ WFSKMEAIFG SDPKYATFSS  240
GISSGSELAL HASKGDLIVD AVAGATDEEI FGANNKVVVI NSTDKRILRN NSFDPGVLLP  300
PSKSASTNNL DGSSPSTDPR RETAAESSPR EFYTTTSKHS HSKKKLCVIN SGQIPAAGDP  360
ESSEFGARRD LLDLKSRIDA ADMELVYLKQ LCESKEKELK DAMQVYEDKN KYRNELVRSL  420
WRVFTRKRYR RCGGDNTISH RLGGRSAHDL MNESLSRKEK KSSSGDQKRK KQRAVLAGSN  480
RAELRLLWVY DFRDEHKTKG PPLITKDRHS DLQFLHLNVQ HTSFLMILRE SF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024531931.1	0.0	uncharacterized protein LOC9641797
TrEMBL	D8RJ50	0.0	D8RJ50_SELML; Uncharacterized protein
STRING	EFJ27649	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	3e-11	Trihelix family protein

Link Out ? help Back to Top
Phytozome	441386
Entrez Gene	9641797

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]