PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

441102

Common Name

SELMODRAFT_441102

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 300aa MW: 32749.9 Da PI: 9.541

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
441102	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.2	2.2e-13	57	139	2	71
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 Wt++evl+Lie+++ e+ +++ + + +W++v ++m++ g+ r qCk kw+nl +yk ik kk 441102 57 WTHSEVLLLIEGKKMESEATIDTSgasclsrdkvmiSSGEKWKRVVDHMKRNGIdDRDVAQCKGKWDNLLSDYKTIKGVLKKS 139 **********985544444433356688888999**************899******************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-5	49	127	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.795	49	126	IPR017877	Myb-like domain
Pfam	PF13837	4.1E-12	55	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MASPLVELVE ASQAGFGGSE VIVGDAAAHK GYGGVGGGAA RNAGDQLSGK RKRNRNWTHS 60 EVLLLIEGKK MESEATIDTS GASCLSRDKV MISSGEKWKR VVDHMKRNGI DDRDVAQCKG 120 KWDNLLSDYK TIKGVLKKSG RPNYFAMSIE ERRKEDPSLP CYFDKDLFDR LDSFLSGRLA 180 IVSPPPPAQA LDHLSTSAQS TRAGKGDHDH HHELAPGSSG KKKRQQSASD VVAAIGKLTS 240 TYMAAVASME EKREARHREA LQFERERLQI ESRDRRELAA QLANLAVALN RVADNLKDI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002970469.1	0.0	trihelix transcription factor ASR3
TrEMBL	D8RGH7	0.0	D8RGH7_SELML; Uncharacterized protein
STRING	EFJ28599	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12351	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-13	Trihelix family protein

Link Out ? help Back to Top
Phytozome	441102
Entrez Gene	9646611

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]