PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 440949 | ||||||||
Common Name | SELMODRAFT_440949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 270aa MW: 28756.5 Da PI: 10.0821 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 179.5 | 4.5e-55 | 25 | 266 | 105 | 296 |
GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................. 186 +++ +++ ++++q +++ ++ a +++ ++ + +k++k ++ + + ++ ++k + s+ k kk+ ++ 440949 25 AHHHHHH--HQHHQHHQPGLPTAAAAVAAAAAVKQPKPRSAARKQPKIEAL-DSSSPPGQHDHTKLGVRSNAKFKKPMLNPGhasgwlammetdaagfll 121 3333333..334555666666677777777888888888777777774433.333333344444445555566666665433567889999999999999 PP GAGA_bind 187 .................................skaek..ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251 +kaek k+ + + + s P+P CsCtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP+++k++ 440949 122 ghhqqqqqqceqeqiaggvasnnaaaspaaataTKAEKsgKNSGGAKAESSTTRKYYPAPFCSCTGTNQQCYRWGNGGWQSACCTTKISMYPLPMNPKKK 221 999999999999999999999999999999988555541144444555666677789******************************************* PP GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 g+R+agrKmS gaf klL++L+aeG d++ vDL+ hWAkHGtn+ 440949 222 GSRVAGRKMSAGAFMKLLDRLTAEGVDVNSSVDLRPHWAKHGTNR 266 ********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 5.5E-38 | 7 | 267 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.6E-52 | 153 | 266 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MPALPPMGCN ELAELELESV ALSAAHHHHH HHQHHQHHQP GLPTAAAAVA AAAAVKQPKP 60 RSAARKQPKI EALDSSSPPG QHDHTKLGVR SNAKFKKPML NPGHASGWLA MMETDAAGFL 120 LGHHQQQQQQ CEQEQIAGGV ASNNAAASPA AATATKAEKS GKNSGGAKAE SSTTRKYYPA 180 PFCSCTGTNQ QCYRWGNGGW QSACCTTKIS MYPLPMNPKK KGSRVAGRKM SAGAFMKLLD 240 RLTAEGVDVN SSVDLRPHWA KHGTNRREL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982276 | 0.0 | Selaginella moellendorffii GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024530393.1 | 0.0 | barley B recombinant-like protein A | ||||
Refseq | XP_024530394.1 | 0.0 | barley B recombinant-like protein A | ||||
Refseq | XP_024530395.1 | 0.0 | barley B recombinant-like protein A | ||||
TrEMBL | D8RFN3 | 0.0 | D8RFN3_SELML; Uncharacterized protein | ||||
STRING | EFJ28896 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1865 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68120.1 | 7e-42 | basic pentacysteine 3 |
Link Out ? help Back to Top | |
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Phytozome | 440949 |
Entrez Gene | 9646068 |
Publications ? help Back to Top | |||
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