PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440949
Common NameSELMODRAFT_440949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family BBR-BPC
Protein Properties Length: 270aa    MW: 28756.5 Da    PI: 10.0821
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440949genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind179.54.5e-5525266105296
  GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................. 186
                +++ +++  ++++q +++  ++       a  +++ ++ +  +k++k ++   +   + ++ ++k +  s+ k kk+  ++                   
     440949  25 AHHHHHH--HQHHQHHQPGLPTAAAAVAAAAAVKQPKPRSAARKQPKIEAL-DSSSPPGQHDHTKLGVRSNAKFKKPMLNPGhasgwlammetdaagfll 121
                3333333..334555666666677777777888888888777777774433.333333344444445555566666665433567889999999999999 PP

  GAGA_bind 187 .................................skaek..ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                                                 +kaek  k+ + +  + s      P+P CsCtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP+++k++
     440949 122 ghhqqqqqqceqeqiaggvasnnaaaspaaataTKAEKsgKNSGGAKAESSTTRKYYPAPFCSCTGTNQQCYRWGNGGWQSACCTTKISMYPLPMNPKKK 221
                999999999999999999999999999999988555541144444555666677789******************************************* PP

  GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                g+R+agrKmS gaf klL++L+aeG d++  vDL+ hWAkHGtn+
     440949 222 GSRVAGRKMSAGAFMKLLDRLTAEGVDVNSSVDLRPHWAKHGTNR 266
                ********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.5E-387267IPR010409GAGA-binding transcriptional activator
PfamPF062173.6E-52153266IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPALPPMGCN ELAELELESV ALSAAHHHHH HHQHHQHHQP GLPTAAAAVA AAAAVKQPKP  60
RSAARKQPKI EALDSSSPPG QHDHTKLGVR SNAKFKKPML NPGHASGWLA MMETDAAGFL  120
LGHHQQQQQQ CEQEQIAGGV ASNNAAASPA AATATKAEKS GKNSGGAKAE SSTTRKYYPA  180
PFCSCTGTNQ QCYRWGNGGW QSACCTTKIS MYPLPMNPKK KGSRVAGRKM SAGAFMKLLD  240
RLTAEGVDVN SSVDLRPHWA KHGTNRREL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822760.0Selaginella moellendorffii GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530393.10.0barley B recombinant-like protein A
RefseqXP_024530394.10.0barley B recombinant-like protein A
RefseqXP_024530395.10.0barley B recombinant-like protein A
TrEMBLD8RFN30.0D8RFN3_SELML; Uncharacterized protein
STRINGEFJ288960.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.17e-42basic pentacysteine 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]