PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

440893

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 1136aa MW: 124526 Da PI: 9.9011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
440893	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.2e-11	241	297	2	55
HHHHHHHHHHHHHHHHHH.......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.......feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lr+llP+ ++K +Ka+ L +++eY++sLq 440893 241 RSKHSATEQRRRSKINDRlrsthfvFQMLRDLLPHG----DQKRDKASFLLEVIEYVQSLQ 297 899************97777777889***7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.9E-18	236	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.227	239	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-12	239	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	241	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-11	241	301	No hit	No description
SMART	SM00353	9.1E-7	245	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47923	1.41E-7	535	599	IPR000195	Rab-GTPase-TBC domain
SuperFamily	SSF47923	1.83E-5	883	944	IPR000195	Rab-GTPase-TBC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence Send to blast
MSQAPGAAGA IEIVKKELDL PAPPAIMAAA AGSSYATEFG LGYEQFGRLR QPQGAPGGFA 60 PDSCKKIAPA PSPRFLQVPA YEQGPSRGAF GSLATQDFLQ PLERGANGNV AAKVPAPVAN 120 GDIPLQLSSR SERNEQMVLD SSPAKESCSS RMHLQMQYGF IDHPHPLFPK NGLEANHHGA 180 VGVSRHWQQG HVSSANKRPR SAQSEGDDND SEERKKIHRG EAASREDINS RSIDVKSNTS 240 RSKHSATEQR RRSKINDRLR STHFVFQMLR DLLPHGDQKR DKASFLLEVI EYVQSLQERV 300 KKFEASEKGR YQERLKPVPW DVKSSTSLKE VPDSSRDKCA LLEDGKSRSF GATTSRAMGR 360 QVGQAPSRPA MSPLASTSAP AVENLDATNT REKTGERSSE SQRQANDASR QSTPVETATA 420 QQQQGSSNEL PIKQGLISLS TAYSQGLLEA LTSALHSSGL DLSKANISVQ IELGKPQEKK 480 AKRKNFISKF AQNAIITNVC LVRMRLPAES MGSSLGLLSV LGEERQASHR LKPERWKSAF 540 DKDGKVVGFS KVLKLIRLGG VDNSIRCEVW EFLLGSYGVG TTWDHRMETR IARRKRYKEL 600 IEKCRTMHVS IGTGTLAYNV GSKIMDARTS RQGAPEQITV DSTHYETKGN SASAVDESLD 660 SFSFTALQSP SLEKDASLSS GTGMESYEMN AGSKAGGLPL KTLLLHADNE PSNSDHSPGR 720 IGPNSPNVLH FKFFHQSPIE VGRSSTRIWT NRDRHENFSR VKRALDTGRN ISGGPAGMLS 780 PNSVPFQGAA ATEERTAEWL WTLHKIGEAT NPVCLSLLER IQEDDCMDYY WTKISPFTSP 840 LPASEDPLSQ SSKITYESKS PLCGLVTSWP NFGRHRIRSG MSFGRNGDSE ISVFVVAAIV 900 VINREKFLKE ARSMDDVIKM FNEIQLKIQV RSCVRAAMKM RTKYHQQLSK RGTGKAKRAS 960 YKMAPGERVE QIAWIGGGVL IYGATAALAF SILDDVLIYK KCSSKAMEVA AEDPRMKSFL 1020 GEGFKQGSWY EASLGSALQK KAVSCTFPVY GDHGSLGSVK LRAVREGNSI SSLAYNIIGP 1080 AQWDLLILEA TLHSADKKTT DRINLMEPSW DSRDGRKAAI ANGHQDYVNK LLAKN*

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence Send to blast

MSQAPGAAGA IEIVKKELDL PAPPAIMAAA AGSSYATEFG LGYEQFGRLR QPQGAPGGFA  60
PDSCKKIAPA PSPRFLQVPA YEQGPSRGAF GSLATQDFLQ PLERGANGNV AAKVPAPVAN  120
GDIPLQLSSR SERNEQMVLD SSPAKESCSS RMHLQMQYGF IDHPHPLFPK NGLEANHHGA  180
VGVSRHWQQG HVSSANKRPR SAQSEGDDND SEERKKIHRG EAASREDINS RSIDVKSNTS  240
RSKHSATEQR RRSKINDRLR STHFVFQMLR DLLPHGDQKR DKASFLLEVI EYVQSLQERV  300
KKFEASEKGR YQERLKPVPW DVKSSTSLKE VPDSSRDKCA LLEDGKSRSF GATTSRAMGR  360
QVGQAPSRPA MSPLASTSAP AVENLDATNT REKTGERSSE SQRQANDASR QSTPVETATA  420
QQQQGSSNEL PIKQGLISLS TAYSQGLLEA LTSALHSSGL DLSKANISVQ IELGKPQEKK  480
AKRKNFISKF AQNAIITNVC LVRMRLPAES MGSSLGLLSV LGEERQASHR LKPERWKSAF  540
DKDGKVVGFS KVLKLIRLGG VDNSIRCEVW EFLLGSYGVG TTWDHRMETR IARRKRYKEL  600
IEKCRTMHVS IGTGTLAYNV GSKIMDARTS RQGAPEQITV DSTHYETKGN SASAVDESLD  660
SFSFTALQSP SLEKDASLSS GTGMESYEMN AGSKAGGLPL KTLLLHADNE PSNSDHSPGR  720
IGPNSPNVLH FKFFHQSPIE VGRSSTRIWT NRDRHENFSR VKRALDTGRN ISGGPAGMLS  780
PNSVPFQGAA ATEERTAEWL WTLHKIGEAT NPVCLSLLER IQEDDCMDYY WTKISPFTSP  840
LPASEDPLSQ SSKITYESKS PLCGLVTSWP NFGRHRIRSG MSFGRNGDSE ISVFVVAAIV  900
VINREKFLKE ARSMDDVIKM FNEIQLKIQV RSCVRAAMKM RTKYHQQLSK RGTGKAKRAS  960
YKMAPGERVE QIAWIGGGVL IYGATAALAF SILDDVLIYK KCSSKAMEVA AEDPRMKSFL  1020
GEGFKQGSWY EASLGSALQK KAVSCTFPVY GDHGSLGSVK LRAVREGNSI SSLAYNIIGP  1080
AQWDLLILEA TLHSADKKTT DRINLMEPSW DSRDGRKAAI ANGHQDYVNK LLAKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8SDC7	0.0	D8SDC7_SELML; Uncharacterized protein
STRING	EFJ17599	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.1	3e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	440893