PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

440304

Common Name

SELMODRAFT_440304

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CAMTA

Protein Properties

Length: 918aa MW: 102957 Da PI: 8.254

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
440304	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	143.1	7.9e-45	18	136	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++e ++rwlk+ e+++iL n++++ + l +++rp sgs+ L++rk ++yf+kDG++w+kkkdgk+vrE+he+LK g+++vl+cy a++ee+p+fqr +yw+ 440304 18 VQEaCARWLKPPEVCDILRNYQRYGFDLnpVPPSRPASGSFNLFDRKALKYFQKDGHNWRKKKDGKAVREAHERLKSGSIDVLHCYCARGEEDPNFQR-SYWM 119 55669****************9988866899************************************************************9.9* PP CG-1 102 Leeelekivlvhylevk 118 Le ++e+ivlv+yl+v+ 440304 120 LEGAYEHIVLVQYLQVH 136 **************986 PP
2	CG-1	115.9	2.1e-36	606	688	35	118
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gsl+L++rk v+yfrkDG++w+kkk gk+vrE+h++LK g+++vl+cy +h+ee+p+fqr +yw+Le ++++ivlvhyl+v+ 440304 606 LGGSLLLFDRKAVKYFRKDGHNWRKKKGGKAVREAHKRLKFGSIDVLHCYCTHGEEDPNFQR-SYWILEGAYKHIVLVHYLQVQ 688 579********************************************************9.9***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	64.195	14	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.5E-55	17	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-41	21	134	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	57.109	546	693	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.9E-49	549	688	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-6	553	594	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.8E-29	607	686	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MATVRGVPQQ DFDMGQIVQE ACARWLKPPE VCDILRNYQR YGFDLNPVPP SRPASGSFNL 60 FDRKALKYFQ KDGHNWRKKK DGKAVREAHE RLKSGSIDVL HCYCARGEED PNFQRSYWML 120 EGAYEHIVLV QYLQVHQGRK SAYRAPEHLE PHAESPSILS SEHGDSSDDV EQLSSKYSIL 180 PETQGSFFQS DIDLNDLLDR PDMFLGQKAL TPAVSLDMSG WKEVLRSYRE NPTNGPVKPE 240 DETLEQRTTR DAFLEQASPI KFEDGMFKLS PRASLSPKAI MEVLSPRGLG RQPQTHFEAQ 300 LRAATAENAM KTAQSLSPTK RVSSPPPAQN VLVDMGRASQ QEGRIKQLAS FARWALEPAP 360 AGWSSVCLLP TKKPRFSSPG PLDVVSDTCY IDILKNKPLV CVNGQYLRSQ VEGSLNSESL 420 LRWLKLPEVG KILRNYQSYR SSQQAHQWIL ALVSLQRLTE IGSNNTDAVS SSIWAAMDDY 480 KETTCTHKNH VRQKGKCKSS LRARALVLQC SSNAGMTCLR SRAIRAPLGT VEMATVRGMR 540 QQDFDMRQII QEACVRWLKP PEVCKILRNY QSYGFDLSHV PPSKPASECS FLLASIVTWT 600 DLPKLLGGSL LLFDRKAVKY FRKDGHNWRK KKGGKAVREA HKRLKFGSID VLHCYCTHGE 660 EDPNFQRSYW ILEGAYKHIV LVHYLQVQQD LESAYKALEH PEAFSHAMDS PLLSSVGTQQ 720 GPSYQQGSLF QPGQDGGILE DCIDLNDLLD SPDKFLGKKA LTPAVSLDMS GWNELLRSYR 780 ENPTTGPVKQ EDETSEQCTT NALLGQVSPM KFEDGMFKES PGASLTPKAI MEVLSPRGLG 840 RQPQTHVEAQ LHAAATNNAI KSLSPRWQET ISSPRPAQNV HEDMGCASQQ VCYLHGRWSQ 900 TFFSAANSCN NKQRIEE*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MATVRGVPQQ DFDMGQIVQE ACARWLKPPE VCDILRNYQR YGFDLNPVPP SRPASGSFNL  60
FDRKALKYFQ KDGHNWRKKK DGKAVREAHE RLKSGSIDVL HCYCARGEED PNFQRSYWML  120
EGAYEHIVLV QYLQVHQGRK SAYRAPEHLE PHAESPSILS SEHGDSSDDV EQLSSKYSIL  180
PETQGSFFQS DIDLNDLLDR PDMFLGQKAL TPAVSLDMSG WKEVLRSYRE NPTNGPVKPE  240
DETLEQRTTR DAFLEQASPI KFEDGMFKLS PRASLSPKAI MEVLSPRGLG RQPQTHFEAQ  300
LRAATAENAM KTAQSLSPTK RVSSPPPAQN VLVDMGRASQ QEGRIKQLAS FARWALEPAP  360
AGWSSVCLLP TKKPRFSSPG PLDVVSDTCY IDILKNKPLV CVNGQYLRSQ VEGSLNSESL  420
LRWLKLPEVG KILRNYQSYR SSQQAHQWIL ALVSLQRLTE IGSNNTDAVS SSIWAAMDDY  480
KETTCTHKNH VRQKGKCKSS LRARALVLQC SSNAGMTCLR SRAIRAPLGT VEMATVRGMR  540
QQDFDMRQII QEACVRWLKP PEVCKILRNY QSYGFDLSHV PPSKPASECS FLLASIVTWT  600
DLPKLLGGSL LLFDRKAVKY FRKDGHNWRK KKGGKAVREA HKRLKFGSID VLHCYCTHGE  660
EDPNFQRSYW ILEGAYKHIV LVHYLQVQQD LESAYKALEH PEAFSHAMDS PLLSSVGTQQ  720
GPSYQQGSLF QPGQDGGILE DCIDLNDLLD SPDKFLGKKA LTPAVSLDMS GWNELLRSYR  780
ENPTTGPVKQ EDETSEQCTT NALLGQVSPM KFEDGMFKES PGASLTPKAI MEVLSPRGLG  840
RQPQTHVEAQ LHAAATNNAI KSLSPRWQET ISSPRPAQNV HEDMGCASQQ VCYLHGRWSQ  900
TFFSAANSCN NKQRIEE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RAW1	0.0	D8RAW1_SELML; Uncharacterized protein
STRING	EFJ30381	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	2e-50	signal responsive 1

Link Out ? help Back to Top
Phytozome	440304
Entrez Gene	9631271

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]