PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440037
Common NameSELMODRAFT_440037
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GATA
Protein Properties Length: 493aa    MW: 53357.8 Da    PI: 7.3569
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440037genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.2e-18317351135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C +Cgt kTplWR+gp g+k+LCnaCG++ rk ++
  440037 317 CKHCGTMKTPLWRNGPLGPKSLCNACGIRLRKARR 351
             ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-14311363IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268311347IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13314355No hitNo description
Gene3DG3DSA:3.30.50.105.6E-14315352IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.21E-13316371No hitNo description
PfamPF003202.7E-15317351IPR000679Zinc finger, GATA-type
PROSITE patternPS003440317342IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MKSASASAAT AASPDHGSSP AASKRICGKR RPQLRSQFSS SSIKVAVNHD SPISASPTSS  60
GEWKRSPASA TGAAKAGSSD AASSPFSSAV VDREVELEEL ETTPKSLVIQ HPEEEGDRDT  120
KFDGLVPGVV AAGEAREDPV DQGVAEEEEE EEIEGGGDDR KVLVVRQNMI SFDDRDQDHH  180
DHEQERSSEQ TAVDCLTSKC KGMDQEKRQD PDTISNSSAA ESDSTTSSTS QASDDHDDAR  240
SHSEKSSSFR QSYMKRHPKG SSEIDQLLLG SPRTRLAAAA TSGAVDNPVS PSGRSSRGDG  300
MGSVGAHGNN NVSTRTCKHC GTMKTPLWRN GPLGPKSLCN ACGIRLRKAR RNSNNQEAPA  360
ASPAGKRKLD QSSSARITSD QQHLRHPYKK SRMAFAREKR QIGSMVRLLP QEQQQQLLIS  420
SSNRSVPKDE EEGAVLLMAL SCGLEEVAYH FRKFKACFVE AEFAVTVATS IIKEQRNERK  480
REWQIQRRQC SA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024528184.10.0GATA transcription factor 21
TrEMBLD8R9M50.0D8R9M5_SELML; Uncharacterized protein
STRINGEFJ311780.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-19GATA transcription factor 16
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]