PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438638

Common Name

SELMODRAFT_438638

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 295aa MW: 32547.5 Da PI: 6.5213

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438638	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH++Fv+av+qLGG+ekAtPk++l+lm+v+gLtl+h+kSHLQkYRl 438638 52 KPRLRWTPELHDQFVKAVAQLGGPEKATPKSVLKLMGVQGLTLYHLKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-32	49	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.561	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-17	51	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-24	52	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-10	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-7	137	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGVTELQASV KALVRSGGEF NQDKACSTFY YVPSSGEASA HLSASGLGND QKPRLRWTPE 60 LHDQFVKAVA QLGGPEKATP KSVLKLMGVQ GLTLYHLKSH LQKYRLGMQI PRPETSGDGR 120 SNSEDSSKQQ ESLPLTQIIA VHAEVEKKLR EQMEIQQQLQ ARIDEQCQHL YKLMESASPQ 180 KKSIMADLEA ARKLQLDGIM ELSKMYSGLQ SAVEQHGKLD QATSNNTAGI KRRPNDDDPQ 240 RQLEEEQERV TKSLVQWKKE PVWDDDEAQH ASGSTAEIST GLNLSSGRGL DLNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-21	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	52	105	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002988201.2	0.0	uncharacterized protein LOC9636347
TrEMBL	D8QX78	0.0	D8QX78_SELML; Uncharacterized protein
STRING	EFJ35362	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	438638
Entrez Gene	9655487

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]