PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438636

Common Name

SELMODRAFT_438636

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 428aa MW: 47912.5 Da PI: 8.9203

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438636	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.9e-33	86	139	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ 438636 86 PRLRWTPDLHHCFVNAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYRS 139 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.813	82	142	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-32	82	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-15	84	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-24	86	140	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	87	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MMQQLDQKDK AMAREEHCAK SHSQANSSSS NKEEEQAHKS MSVSSPESSS AGTNSGKSCD 60 SSSRKNSSSS AATAGGVRQY VRSKMPRLRW TPDLHHCFVN AVERLGGQDR ATPKLVLQLM 120 DVKGLTIAHV KSHLQMYRSM KNDENHGQAS SEAGQDHLAL IDDRSSLVGT AFASSLQQHL 180 DLGHHHPHES FAAFQQQEQQ QQHFFCRPVL QPLARHHHHQ HQQEHGFMVE SSSSSGLRSH 240 RSLPNDLVHL NDYWLNLQTH KQISPGSSSS NYSSRSEWTQ NHLMQIDHHH HHHHHRAAQQ 300 AAINNNNNNV IDNNINNRHR VFEELRKQRL VLDSSSHSTH ATMQLLDRMN NRRSSPDSTD 360 DDDDDDGSNL SLSLTSSPAG MKNKAKRRNG KYIRRGSSST SSGQPDQNRG EPVIRLDLTL 420 SIAHKSP*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MMQQLDQKDK AMAREEHCAK SHSQANSSSS NKEEEQAHKS MSVSSPESSS AGTNSGKSCD  60
SSSRKNSSSS AATAGGVRQY VRSKMPRLRW TPDLHHCFVN AVERLGGQDR ATPKLVLQLM  120
DVKGLTIAHV KSHLQMYRSM KNDENHGQAS SEAGQDHLAL IDDRSSLVGT AFASSLQQHL  180
DLGHHHPHES FAAFQQQEQQ QQHFFCRPVL QPLARHHHHQ HQQEHGFMVE SSSSSGLRSH  240
RSLPNDLVHL NDYWLNLQTH KQISPGSSSS NYSSRSEWTQ NHLMQIDHHH HHHHHRAAQQ  300
AAINNNNNNV IDNNINNRHR VFEELRKQRL VLDSSSHSTH ATMQLLDRMN NRRSSPDSTD  360
DDDDDDGSNL SLSLTSSPAG MKNKAKRRNG KYIRRGSSST SSGQPDQNRG EPVIRLDLTL  420
SIAHKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	87	141	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	87	141	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002988200.2	0.0	transcription initiation factor TFIID subunit 1
TrEMBL	D8QX76	0.0	D8QX76_SELML; Uncharacterized protein
STRING	EFJ35361	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	438636
Entrez Gene	9655486

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]