PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 438544
Common NameSELMODRAFT_438544
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 810aa    MW: 86715.3 Da    PI: 9.3931
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
438544genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.22.2e-13150236286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               Wt++ v++L++   e+  ++++g  + ++W e+++++    +  +  ++p+qCk+k +nl+k+y+k++++ + +  +ss+++++f++++
    438544 150 WTEDAVHVLLDHFLEKYMSYEKGMIRNADWVEIAQRVnqqlEGNKPVKTPEQCKNKVDNLKKQYRKERRRGSLG--PSSTNWAFFSRMH 236
               *************************************98865556678************************97..77889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-17150238No hitNo description
SuperFamilySSF523173.88E-44574758IPR029062Class I glutamine amidotransferase-like
CDDcd031392.31E-61574752No hitNo description
Gene3DG3DSA:3.40.50.8803.8E-63574780IPR029062Class I glutamine amidotransferase-like
PfamPF019653.4E-22575733IPR002818DJ-1/PfpI
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MEEEGTRSRN WLWLWRGIFA SPIVEEGEWR AREGCRTFSL IDGPWKIKRY RVDRGGRIPM  60
AASSDSESKK SRKEELGGGG SSKEEKSDTA AGGSDQAQQQ QQQQQQLAVV PSPAAGGGGT  120
ANGAGGTAGG TQPAAASSAA AAAKERDYIW TEDAVHVLLD HFLEKYMSYE KGMIRNADWV  180
EIAQRVNQQL EGNKPVKTPE QCKNKVDNLK KQYRKERRRG SLGPSSTNWA FFSRMHDIFE  240
SDYKKTGGGG GGGGGGGGGG GGDRDPGGAS EDVPPQNNSN PAPAAAAAAN NIEDAHHHHR  300
LRSAVVPDHY LASREFIRKQ QEELMQYNKR PSRRSETPPP GSGGAPISQQ HHPHHHHHHP  360
MMLLPESSHM AFPPHASNHH HRESGSTPAR KKAKSDRHEQ HGVPHGMTHG IPQRHHDQRH  420
LQPAGPPQHH AEGSGPPSSD SGGGGGGGGV AAVEGSTKHE RKLHRHQLAA LRRDFMEGFT  480
GFAEVMLKIE VAKMEMQRDL ERQRAEMELH RTQMMLSNQL QLAKYLKASP IPHGMPPDGG  540
GAGPFWPNFG FTDANANAAG GTGGPGGTTP RLQLAIPIFP DFTALDAVGP YEVLHLLPNV  600
EVLFVSHQPG LYAAGMGMLT LQATASFDQV TRPQILVVPG GMGTRRLLQD RVILDWIRKV  660
HEHTLYTASV CTGSLLLGAA GLLKGIEATT HWNSHELLAE FGAKPVSSRI VRQGKIITAA  720
GVSAGIDMAL QLAALLTDEA TAKTLQLFIE YDPQPPFDSG SVAKAGPEVV SRAKELSSKR  780
LQAVAGASAA AAAAAAAAAA AAVVCTKRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3non_A4e-505727816214Isocyanide hydratase
3non_B4e-505727816214Isocyanide hydratase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524097.10.0uncharacterized protein LOC9643608
RefseqXP_024524098.10.0uncharacterized protein LOC9643608
TrEMBLD8QWN60.0D8QWN6_SELML; Uncharacterized protein
STRINGEFJ352690.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-17Trihelix family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]