PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 437944
Common NameETT2-1, SELMODRAFT_437944
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 796aa    MW: 88237.8 Da    PI: 6.5667
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
437944genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.6e-24139240199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k lt+sd++++g +++p++ aee+       ++++++  +l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el+++v
  437944 139 FCKNLTSSDTSTHGGFSVPRRAAEEClppldyqQSPPAQ--ELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSVFVSQKKLVAGDAVLFL--RGDNGELRIGV 237
             89****************************995555544..8************************************************..3489999**** PP

             E-S CS
      B3  97 frk 99 
             +r+
  437944 238 RRA 240
             996 PP
2Auxin_resp126.22.2e-41266348183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha+stk++F+++YnPras++eFvv+++k++ka+++++svGmRfkm+fete+sserr++Gt++gv d+d+ rW nSkWr+L+
      437944 266 AAHAVSTKTMFTIFYNPRASPAEFVVPYHKYVKAFTHNLSVGMRFKMRFETEESSERRYMGTITGVGDIDSDRWINSKWRCLQ 348
                 79********************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-43128269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-40133251IPR015300DNA-binding pseudobarrel domain
CDDcd100177.91E-22138239No hitNo description
PfamPF023624.0E-22139240IPR003340B3 DNA binding domain
SMARTSM010193.0E-24139241IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858139241IPR003340B3 DNA binding domain
PfamPF065071.1E-38266348IPR010525Auxin response factor
SuperFamilySSF542772.01E-12658742No hitNo description
PROSITE profilePS5174528.512663747IPR000270PB1 domain
PfamPF023092.6E-11664751IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MLSSSQTYGQ LGTMMHRPTP QRPQPNHGNT NALDSEVWHA CAGPLVCLPR VGDRVVYFPQ  60
GHIEQVAAST NQSADMQMPH YNLPSQIYCR LLNLTLGADR ETDEVFAQMT LVPENEQGDQ  120
SIDTEDELSP CPKRKLSMFC KNLTSSDTST HGGFSVPRRA AEECLPPLDY QQSPPAQELV  180
AKDLHGVEWK FRHIYRGQPR RHLLTTGWSV FVSQKKLVAG DAVLFLRGDN GELRIGVRRA  240
VRQQNSVTSS SLLSSHSMHL GVLAAAAHAV STKTMFTIFY NPRASPAEFV VPYHKYVKAF  300
THNLSVGMRF KMRFETEESS ERRYMGTITG VGDIDSDRWI NSKWRCLQVG WDEQTANERQ  360
ERVSPWEIEP FIAPNVANPP TTQRVKKFRP NTPANEFPTG KNNSDSAQAM HMRALQGSHA  420
LGMPSKEEEG LRGSSPFAVW PYNRDDLKGE SWIQLRTADA PVMDMFGNII APAGRHMDSS  480
NVEMHQQLRH CLQQLRDQKS CHFDASNSQV QLSPRLSSFS PYQQGDAADL HLSTPRPTNH  540
GVVRDSSWLS PLGPTQTDAQ AYVAADTTLS MQFSKSEMTT ERMHIDSNPD HEPREHSCKI  600
FGFSLIEKSP PAASRNPEEA RLNPSRGGEQ MTRCSGRAGP SAGNGSLEHE RCASRPASAW  660
SLRTCTKVHL QGAAVGRAVD LSKFSCYSEL LLELQQLFGL DNALDDPDSG WQVVYTDNEG  720
DMLLVGDDPW QEFCNMVRNI RILSPAEVEK LTQGALGKSA VVEEEPSTRD ASKLSDHQDS  780
SSPPAISTKG AASDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1452437110355Auxin response factor 1
4ldw_A1e-1452437110355Auxin response factor 1
4ldw_B1e-1452437110355Auxin response factor 1
4ldx_A1e-1452437110355Auxin response factor 1
4ldx_B1e-1452437110355Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961629.10.0auxin response factor 25
TrEMBLD8QS800.0D8QS80_SELML; Auxin response factor
STRINGEFJ368890.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]