PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 437219 | ||||||||
Common Name | SELMODRAFT_437219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37640.7 Da PI: 7.2112 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv++++++G ++W+ ++++ g+ R++k+c++rw +yl 437219 13 KGLWSPEEDEKLVRYITKYGHKCWSIVPKHAGLQRCGKSCRLRWINYL 60 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+el+v++++ lG++ W+ Ia ++ gRt++++k++w++ 437219 66 RGHFSQQEEELIVKLHAVLGNR-WAQIATQLP-GRTDNEIKNFWNS 109 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.779 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-12 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.609 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.08E-10 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGSQSSAKPK LRKGLWSPEE DEKLVRYITK YGHKCWSIVP KHAGLQRCGK SCRLRWINYL 60 RPDLKRGHFS QQEEELIVKL HAVLGNRWAQ IATQLPGRTD NEIKNFWNSC LRKKLRQVGI 120 DPHTHKPMAA GPDSVARSSE ELGEVIGVSG HSLHNNHVKD NGFRFRQSLQ QHNEEEENSF 180 SLSMLPITLS PHQQQQHCDA GMNFVPATLA FHHQAQAHHH HHQAHVQAQA QEQQTAASSV 240 FPFWIDNSSS NNSSSNSPSS CSETTDSWSC FSDGIFSPTG TGGSVFKSWC FFDSSILDTK 300 IDAASWQQQS SKSLAHFYDD EPTDSDPISA VLDQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 9 | 115 | 3 | 108 | B-MYB |
1h88_C | 2e-31 | 4 | 115 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-31 | 4 | 115 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | LRKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002960723.1 | 0.0 | transcription factor MYB32 | ||||
TrEMBL | D8QPD4 | 0.0 | D8QPD4_SELML; Uncharacterized protein | ||||
STRING | EFJ38262 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 1e-72 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | 437219 |
Entrez Gene | 9633247 |
Publications ? help Back to Top | |||
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