PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 437219
Common NameSELMODRAFT_437219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 336aa    MW: 37640.7 Da    PI: 7.2112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
437219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv++++++G ++W+ ++++ g+ R++k+c++rw +yl
           437219 13 KGLWSPEEDEKLVRYITKYGHKCWSIVPKHAGLQRCGKSCRLRWINYL 60
                     678*******************************************97 PP

2Myb_DNA-binding50.45e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+el+v++++ lG++ W+ Ia  ++ gRt++++k++w++
           437219  66 RGHFSQQEEELIVKLHAVLGNR-WAQIATQLP-GRTDNEIKNFWNS 109
                      799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-26563IPR009057Homeodomain-like
PROSITE profilePS5129426.779864IPR017930Myb domain
SuperFamilySSF466896.36E-2910107IPR009057Homeodomain-like
SMARTSM007175.2E-141262IPR001005SANT/Myb domain
PfamPF002498.0E-161360IPR001005SANT/Myb domain
CDDcd001673.38E-121660No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2564115IPR009057Homeodomain-like
PROSITE profilePS5129421.60965115IPR017930Myb domain
SMARTSM007177.8E-1565113IPR001005SANT/Myb domain
PfamPF002492.7E-1466110IPR001005SANT/Myb domain
CDDcd001674.08E-1069108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGSQSSAKPK LRKGLWSPEE DEKLVRYITK YGHKCWSIVP KHAGLQRCGK SCRLRWINYL  60
RPDLKRGHFS QQEEELIVKL HAVLGNRWAQ IATQLPGRTD NEIKNFWNSC LRKKLRQVGI  120
DPHTHKPMAA GPDSVARSSE ELGEVIGVSG HSLHNNHVKD NGFRFRQSLQ QHNEEEENSF  180
SLSMLPITLS PHQQQQHCDA GMNFVPATLA FHHQAQAHHH HHQAHVQAQA QEQQTAASSV  240
FPFWIDNSSS NNSSSNSPSS CSETTDSWSC FSDGIFSPTG TGGSVFKSWC FFDSSILDTK  300
IDAASWQQQS SKSLAHFYDD EPTDSDPISA VLDQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3191153108B-MYB
1h88_C2e-31411549159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-31411549159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LRKKLRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960723.10.0transcription factor MYB32
TrEMBLD8QPD40.0D8QPD4_SELML; Uncharacterized protein
STRINGEFJ382620.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-72myb domain protein 55
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]