PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 432055
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 305aa    MW: 33940.6 Da    PI: 4.4358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
432055genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1011.7e-311613003149
    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
             +lL ecA+av++++ +++ +l+  +++ ++++ + ++R a +f++AL arl + +s+ly+al+ + ++         ++ l+    P++  + ++ N+ Ilea
  432055 161 SLLRECARAVAARNSAQVYNLIGLIKNSVTSENSHLERTALFFVNALVARLKGCGSQLYSALSREVSQ-------KRYVGLLCMNLPWFSATEVISNHIILEA 256
             6899*************************************************999999877654443.......4677889999****************** PP

    GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
              +g++r+Hi+D++i +G QWp L++aL+++peg+p lR+Tg++s
  432055 257 CKGAKRIHIVDYGILYGSQWPWLIRALSQQPEGAPLLRMTGIDS 300
             ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.803.2E-5355IPR015916Galactose oxidase, beta-propeller
SuperFamilySSF1172816.67E-5355No hitNo description
PROSITE profilePS5098522.87133305IPR005202Transcription factor GRAS
PfamPF035145.8E-29161300IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGQLYIVGG NSMGEEPDAE VYKPVEDRWD PLPLPPSLEN RFHNALLVDD SKMVVTLCCG  60
GPTVFDFEVM MEEEGYRSQM TTGSLIPLLQ KALLQHQLDD PALSYLSKML LGGDSDSDEQ  120
EVATPQQNRY QAYMDDLNSI IRGCVQSPDS DQEQVDQEVF SLLRECARAV AARNSAQVYN  180
LIGLIKNSVT SENSHLERTA LFFVNALVAR LKGCGSQLYS ALSREVSQKR YVGLLCMNLP  240
WFSATEVISN HIILEACKGA KRIHIVDYGI LYGSQWPWLI RALSQQPEGA PLLRMTGIDS  300
SGMID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-121633008149GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002994118.21e-168scarecrow-like protein 13, partial
TrEMBLD8TEU41e-168D8TEU4_SELML; GRAS family protein (Fragment)
STRINGEFJ048111e-169(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.15e-23SCARECROW-like 14