PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 430716
Common NameFAMA1-2, SELMODRAFT_430716
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 622aa    MW: 66838.6 Da    PI: 5.7234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
430716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13401452155
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A+e++k+L+
  430716 401 QRQTHIAVERNRRKQMNEHLNVLRSLMPGS---YVQRGDQASIIGGAIEFVKELE 452
             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.62E-14399456No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13399455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.383400451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16400468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10401452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9406457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MMMMVIMILG GSFTRTLREG KKKELVVSLP CCKAPLYYYN NAMHTSLQEA FKVAIELSFK  60
EQELISGDFF VLGLSPEKPP DFCSLRDCFN VGGAQALNAG GVQQQIPRKE FFHLHAQGTH  120
SAEMEEAATT CVMPRFMAST SSSVEYQNHS LLFSPYHASA ADSSAMDSTD VSLMGNLLTD  180
LSSDFPYIGA TTASGRYSVP DILQFPADQA SKVTLLQMLE ESDTSSPNSY THHLKLPVLE  240
EPCDKLHKQQ QPQLLSCSSE TGLIHQPDQS VGPEKCIAGL DSVDFSSAAE SLLKPCKVEP  300
EFQAPPVVLA EHNSVIAVDT FNSAAISANS DDISNHLGAA AGAAATAGVA AAVAGTTNSA  360
GGCAGGGVSQ SSSGAETPGT QHRPKRKRIK SCKNSEEVES QRQTHIAVER NRRKQMNEHL  420
NVLRSLMPGS YVQRGDQASI IGGAIEFVKE LEQLLQCLQA QKRRRLYSDA FSPKPSPSAV  480
SSIPLPPFPP YASSPAPSLD NPDPTAADSS SKFVNDNFYD CKQIVAEAKS EVADIEVRMA  540
GSDAVVKILS QRRPGQLLKT ISALESMCMS IVHTNITTIE QTVLYSFTVR IGMESRLSVD  600
EIAQGIQRIF SCNVSAAASD L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401412RQTHIAVERNRR
2461465KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024521953.10.0transcription factor SPEECHLESS
RefseqXP_024521954.10.0transcription factor SPEECHLESS
RefseqXP_024521956.10.0transcription factor SPEECHLESS
RefseqXP_024521957.10.0transcription factor SPEECHLESS
RefseqXP_024521958.10.0transcription factor SPEECHLESS
TrEMBLD8TAA20.0D8TAA2_SELML; Uncharacterized protein FAMA1-2
STRINGEFJ064650.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.13e-64bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]