PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 428344 | ||||||||
Common Name | SELMODRAFT_428344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 373aa MW: 40324.1 Da PI: 8.1631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.8e-20 | 243 | 293 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +grW AeIrd r r++lg+f+t+e+Aa+a++aa++kl+g+ 428344 243 VFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 293 59*******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 242 | 300 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.983 | 243 | 300 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-32 | 243 | 306 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 243 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-21 | 243 | 300 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.57E-19 | 244 | 301 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 244 | 255 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 266 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MALHEVLTGI KEEPRSFPSS PMLFDQDHCH DSFDHLLYAG GAAGSSSFNL RPAGRRRHDQ 60 EFCSQLDALA LDHNPCTSPI PSPGHSSNSS LDGIAAVVGQ RILFGGGGGA TADSTSSSSH 120 HHRHHHDHPV TPRYNAAATT NYRCSVPDSS RQDDMDLMVG QEHFSESHGH CFLDDHTFYG 180 SRRGHSELDL DRSLSSKRTS HTTIDSLAAA AAAAGYSLAS SSPDPPNGAA VSAATGAANP 240 GRVFRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTPEDAA RAYDAAARKL RGAKARTNFA 300 IPSSSGQPII PPAVSHHHHQ QQQQQSKCHG TNILLSSSSS SSGYQHQQHS YDLDLKLKLW 360 NSSNSSSSYR RS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-16 | 241 | 307 | 3 | 70 | ATERF1 |
3gcc_A | 5e-16 | 241 | 307 | 3 | 70 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002990097.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | D8T2J2 | 0.0 | D8T2J2_SELML; Uncharacterized protein | ||||
STRING | EFJ09106 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 4e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 428344 |
Entrez Gene | 9628992 |
Publications ? help Back to Top | |||
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