PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 424843
Common NameSELMODRAFT_450022
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 643aa    MW: 69712.4 Da    PI: 5.9238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
424843genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS194.56.9e-602556333374
    GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
             +lL +cA+av+ +d ++a++l   ++ +   +s ++dp +R+a yf+e L ar++++++ l++a ++++      +    ++++  +++P + + h++  ++I
  424843 255 TLLHDCAHAVAVRDVTNANSLAVSIRRQhgaSSTAADPARRVAYYFVESLLARVLGTGTALAAATASNSGG---PDVMERVYEFRLHATPSPLVPHFVSTSTI 354
             7899****************9988887778555666********************665555443333333...444455667778999999*********** PP

    GRAS 103 leavegeervHiiDfdis.qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeL.rvkpgE 200
             + a++g++ +Hi+ +++  + +QW  LlqaLa R+  +  +lR+T+v+sp+  +k  l ++++r+    ++lg++ e ++ +a+  ++e++ ++   r  pgE
  424843 355 VAAAQGKRFLHIVEIGMArNRFQWSLLLQALAHRRdVPLRRLRVTAVDSPQ--HKALLAQLAQRIIFESSRLGLEAEVELEIADahAWEAVLPRIVpRAAPGE 455
             ****************862579**********88857778*********88..99*****************99988876433333677776666566667** PP

    GRAS 201 alaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl.eaklpres.eerikvErellgreivnvv 298
             +l+Vn  ++l  l de++ ++  +r++vL++++++ P v+v+  +   +   + sFlerf++a+  + a fd+  e + + ++   r+ +E ++lg+ei n+v
  424843 456 VLVVNALFALDFLEDETAVQARsPRRAVLSALRRMDPAVLVLGINHGYRavPQFSFLERFVQAVTRFNAKFDAAlECGSGGAQaAGRAAYEGQFLGPEILNLV 558
             ***********999988655444*******************9888666346779*****************98887766555599***************** PP

    GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             ac g++r  r+   e+W++++  aGF ++pl+e+++  a++++ +++ + ++++ ++g++ l Wk+ +   vS+W+
  424843 559 ACDGSDRLVRTAPCEEWERAMVGAGFVALPLEESTVLRAQAMMGNYN-RNFELDYSDGWIKLAWKKVTTQCVSVWQ 633
             ***********************************************.55*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.261227614IPR005202Transcription factor GRAS
PfamPF035142.4E-57255633IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEFLGRDLSD PVSSGENYGY GIDGSSPAAV ESPGSSGFTL EELNSLMMDE NGGGESAMAG  60
SSMIKELQQL ILYDSPSPSS SSSQQQQAVT VTTSASDWSS LDGLSIKSWT SEMIVGEDQE  120
VSSSSCNTME RSSNQELSSS DSSGSANLRD LTPTHVADRQ ELRGFSSDRA DLVGILQEVI  180
ASHLATDNHK RNSQEKPAAT AINRKKRNSA ATSEEEDAVE GLKTVIKIRR QGSETADKSN  240
GHNPRLYSVS PDIMTLLHDC AHAVAVRDVT NANSLAVSIR RQHGASSTAA DPARRVAYYF  300
VESLLARVLG TGTALAAATA SNSGGPDVME RVYEFRLHAT PSPLVPHFVS TSTIVAAAQG  360
KRFLHIVEIG MARNRFQWSL LLQALAHRRD VPLRRLRVTA VDSPQHKALL AQLAQRIIFE  420
SSRLGLEAEV ELEIADAHAW EAVLPRIVPR AAPGEVLVVN ALFALDFLED ETAVQARSPR  480
RAVLSALRRM DPAVLVLGIN HGYRAVPQFS FLERFVQAVT RFNAKFDAAL ECGSGGAQAA  540
GRAAYEGQFL GPEILNLVAC DGSDRLVRTA PCEEWERAMV GAGFVALPLE ESTVLRAQAM  600
MGNYNRNFEL DYSDGWIKLA WKKVTTQCVS VWQPRRIILP RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-212506331375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002985921.10.0scarecrow-like protein 14
TrEMBLD8SR690.0D8SR69_SELML; GRAS family protein
STRINGEFJ130980.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-40GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]