PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 424604
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 671aa    MW: 74504.2 Da    PI: 5.1517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
424604genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12338381755
             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eY+k+Lq
  424604 338 VAERKRRKKLNERLYSLRALVPKI-----TKMDRASILGDAIEYVKELQ 381
             68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-209161IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.42E-15328385No hitNo description
PROSITE profilePS5088815.84331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17336398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17338393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.5E-5459526No hitNo description
SuperFamilySSF550219.81E-7459524No hitNo description
PROSITE profilePS5167111.151462537IPR002912ACT domain
CDDcd048735.76E-8465526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAKAIVPGLQ ERLRSLVNGK GWDYVVYWKL NDDQRFIDWV GCCCGGVTAG HGIGADFFSP  60
QPHYLDGGAP CPDISFPHPS TKTCTILSAM TLSPSIPLDS AGVHAQVLLS GQPRWINFSL  120
ESNQHEGVQT KVYIPIQNGI VELGSSSQIA ENAMVIQSVK AKCGDPWQDF QGFQENVDQQ  180
GFKSLYKNQE DGLDKHFNGH GDQVHWTSAL DTHPWEHDVG FSDNQFSLNI AAPTQLNFLG  240
QPSKTGGQPS DHFDKQVDCS RPEKQGPPFV QGLQDVPPLA PPNHSFSESP HGSGVSKENS  300
EVKQETRADS SDCSDQVDED DEKATGRSGR RHLSKNLVAE RKRRKKLNER LYSLRALVPK  360
ITKMDRASIL GDAIEYVKEL QQQVKELQDE LEDDSQAANN IPTMTDVCGG GHKHPGSEGI  420
TIADVDTNKC ALKADDINDK KVEDLTQPMQ VEVSKMDAHL LTLRIFCEKR PGVFVKLMQA  480
LDALGLDVLH ANITTFRGLV LNVFNAEMRD KELMQAEQVK ETLLEMTSQP EARSSSSLVS  540
ESHMGVITID GGSGSDCSCK SVEYNNVANF TILEDGYNFK PGVSRQLLDC KDHNKRNAIA  600
RWLNMEYGRH EIEDNNPTYS YFVEDLQCFE ITSFNGWGHF RTTNGWYGWS FWAFTGSFIQ  660
SSNHLSVDFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15329390263Transcription factor MYC2
5gnj_B3e-15329390263Transcription factor MYC2
5gnj_E3e-15329390263Transcription factor MYC2
5gnj_F3e-15329390263Transcription factor MYC2
5gnj_G3e-15329390263Transcription factor MYC2
5gnj_I3e-15329390263Transcription factor MYC2
5gnj_M3e-15329390263Transcription factor MYC2
5gnj_N3e-15329390263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339346ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002985518.10.0transcription factor ABORTED MICROSPORES
TrEMBLD8SQG00.0D8SQG0_SELML; Uncharacterized protein AMS-1
STRINGEFJ133920.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-86bHLH family protein