PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 424152
Common NameSELMODRAFT_424152
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 512aa    MW: 56508.3 Da    PI: 8.4821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
424152genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12164208755
             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               Er RR++++s f +L ++lPk +      K +K++i+ +A++YIksL+
  424152 164 WTERERRKKMRSMFVTLHSMLPKvP-----SKADKSTIVDEAINYIKSLE 208
             57*********************77.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-14160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-11160210No hitNo description
Gene3DG3DSA:4.10.280.105.6E-15161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9162208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8165213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MASCILPAFS TIVPEFSTAR YDADARIRDW GMYPERFGVV ESLSAAPQQQ HDSAMEMSGL  60
VSRSSHCKIE PDCLIRAPSD FSQFPSKAVG DSSSLDYHLH KGVKRPLEVV DIAASSKNTA  120
KEKRLDSDCG SLHSVQDTTT GGAASPLCSS PSKMGEPDHE VHIWTERERR KKMRSMFVTL  180
HSMLPKVPSK ADKSTIVDEA INYIKSLEQK MQRLLKKKSE KVKSAVQQSE ASGDGDKAKN  240
KMVSDSEILV TQRGSNSSFR TLSSSNVVFN LCGADAFITI CASARPNLLS RIFSCVIQML  300
RMDVRNVQIT DTSDNRRLLI IHACATDVTR RVVVVSLSCR EKKSVVQRRE ELSKVLFVGG  360
IGEAPESSVL DLGQRGGGPC SWDGSVVMMG DTKRLTKFVL WPQAKQDIRI EDEPDGGDEW  420
TKEPLFQQDE CSVLLLPLLL SLRQCKVGWE STVKTNTARG KRVGDKTSNG TGWTELFLGV  480
WSLAHHQARP SSVLYDDSLY ENAKNITSKR S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212221RLLKKKSEKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024514766.10.0transcription factor bHLH96
RefseqXP_024514767.10.0transcription factor bHLH96
TrEMBLD8SNZ70.0D8SNZ7_SELML; Uncharacterized protein
STRINGEFJ139650.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-25bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]