PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 424114
Common NameNPH4B-2, SELMODRAFT_451397
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 432aa    MW: 48432.1 Da    PI: 8.4945
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
424114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.5e-25121222199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f k+lt sd++++g +++p++ ae+        + +++  ++l+ +d+++++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F   ++++++ ++++
  424114 121 FSKTLTASDTSTHGGFSIPRRAAEKVfppldftKTPPA--QELVARDLHNNEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDTVLFL--RDEQGQHMLGI 219
             88*****************************7544444..58************************************************..55788889999 PP

             E-S CS
      B3  97 frk 99 
             +r+
  424114 220 RRA 222
             997 PP
2Auxin_resp1232.2e-40247330183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv++++k++kal+  +++vGmRf+m++etedss+rr++Gt++g+ dldpvrWpnS+WrsLk
      424114 247 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYQKALHpPQLTVGMRFRMEMETEDSSTRRYMGTITGIGDLDPVRWPNSHWRSLK 330
                 79*********************************9889*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-44106250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-40119235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-23120216No hitNo description
PROSITE profilePS5086313.197121223IPR003340B3 DNA binding domain
SMARTSM010194.8E-24121223IPR003340B3 DNA binding domain
PfamPF023624.5E-23121222IPR003340B3 DNA binding domain
PfamPF065071.4E-35247330IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNTEMEGGDK KAINQALWLE CAGPLITLPA IGSQVVYFPQ GHSEQVIAST HKEADFEVPS  60
YPNLPPQLFC ILHNITLHAD QENDEVFAQM TLQPFSQTAL LKDPFLLPDF GIQTKQTIVS  120
FSKTLTASDT STHGGFSIPR RAAEKVFPPL DFTKTPPAQE LVARDLHNNE WHFRHIYRGQ  180
PRRHLLTTGW SVFVSAKRLQ AGDTVLFLRD EQGQHMLGIR RANRQQTNLP TSLLSSDSML  240
IGVLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYQKA LHPPQLTVGM RFRMEMETED  300
SSTRRYMGTI TGIGDLDPVR WPNSHWRSLK VGWDESTAGQ KQRRVSAWEI EPLTVPFLLC  360
NSSFLLRSKR PRGTEEELQM KAPSIWARGE EGKFSMQNMN FPGLSGMDHW LQLQQKAGGS  420
AALHPPRNAD H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-161435142388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024515880.10.0auxin response factor 16 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLD8SS990.0D8SS99_SELML; Auxin response factor
STRINGEFJ127020.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]