PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

423505

Common Name

SELMODRAFT_423505

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 308aa MW: 33637.7 Da PI: 6.0649

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
423505	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	94	148	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFveav+ LGG+e AtPk++l +m v+ +t++hvkSHLQkYRl 423505 94 KQRLRWTPELHQRFVEAVALLGGPETATPKSVLSVMAVPEITIYHVKSHLQKYRL 148 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.554	90	151	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-16	94	149	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-29	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-25	94	149	IPR006447	Myb domain, plants
Pfam	PF00249	4.4E-8	96	147	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-12	178	209	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDDAEFSAAL EMMLCSPQEQ GGGGNGLMKN EVEWAQEGWT SLLNPSDGGG DGEESSSKKG 60 VVVPQFVQVR DNSGSATPSN SSSSGGSGIS PNLKQRLRWT PELHQRFVEA VALLGGPETA 120 TPKSVLSVMA VPEITIYHVK SHLQKYRLNK QIPEDPEGAP KPEKKKLTLN KLAETTAVTE 180 NLRLQMEVQR RLHETIEIQR QLQLQIEARL QLMHDGELKL KHTQTKSIQS EDKGEPEATC 240 SSKRDEVVAE AAANPRLAVP KTKRPLDHEE DHTEETSEVT CNNATVSPKR RLKLSQPGAS 300 ESSVVSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	94	147	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	94	147	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	94	147	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	94	147	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	94	147	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002984454.2	0.0	uncharacterized protein LOC9644051
Swissprot	Q8GUN5	2e-38	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	D8SLX5	0.0	D8SLX5_SELML; Uncharacterized protein
STRING	EFJ14504	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	423505
Entrez Gene	9644051

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]