PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

422900

Common Name

SELMODRAFT_422900

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HB-other

Protein Properties

Length: 604aa MW: 69187.5 Da PI: 9.9224

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
422900	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.4e-21	7	61	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+++++++yps+ r eL+++l+Lt+rqVk+WF+ rR k++k 422900 7 KRKMKTPSQLEILERVYAEDKYPSEIVRSELSHQLNLTDRQVKMWFCHRRLKDRK 61 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.746	2	62	IPR001356	Homeobox domain
SMART	SM00389	4.8E-18	4	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-17	5	62	IPR009057	Homeodomain-like
CDD	cd00086	9.94E-15	7	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.7E-19	7	61	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-18	7	61	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MGDDHPKRKM KTPSQLEILE RVYAEDKYPS EIVRSELSHQ LNLTDRQVKM WFCHRRLKDR 60 KGSTTTTTTT TTTSTEETRH KKNQQRIHPQ YQLDHHHHLL PPPPPPAPPP PPPHHHHPGL 120 SLDFGSPMQQ QQPMRVLPIA TAAPHNFLDM MHPEERAFHM RQLAKRDLET NGGRGSAYRR 180 LGLHNVSPLD CRLSVSPEVA AIRLVEEQLG EPMREDGPIL GYEFDPLPPG AFDTPIEHGS 240 QYPRSQFATP EGVYNSESKA HARHEPKLGR QALGSSDFSP SPATSSSKRK NSSSSPFLPL 300 ATVPQSPRVP HEHQFIPEHP TGTGAHFYDR SSSKQQQQQP QQQSLELSTR ISPLSFLPPA 360 GVETFGNGFC TESRQAPTLG LGFPPPSDMR FPADFLPRTG MPFPPPEVQL LPPVRPPMSE 420 KAIAGTERLI MLHEQEQARL ERKRKAEEAR IAKEHEAQDK RMKKEMERQE AMRRKKEDQE 480 RKESEKVHRE KQKELERLAR EKAREEERLQ RQHKKEYERM EKLLQKENQR VAKLRQKEEM 540 RREKEATKLR AAYERATAKK LAKLSTGLID DEQLELMQMG AFVQGLISGS EFDPNKSKKM 600 TLW*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MGDDHPKRKM KTPSQLEILE RVYAEDKYPS EIVRSELSHQ LNLTDRQVKM WFCHRRLKDR  60
KGSTTTTTTT TTTSTEETRH KKNQQRIHPQ YQLDHHHHLL PPPPPPAPPP PPPHHHHPGL  120
SLDFGSPMQQ QQPMRVLPIA TAAPHNFLDM MHPEERAFHM RQLAKRDLET NGGRGSAYRR  180
LGLHNVSPLD CRLSVSPEVA AIRLVEEQLG EPMREDGPIL GYEFDPLPPG AFDTPIEHGS  240
QYPRSQFATP EGVYNSESKA HARHEPKLGR QALGSSDFSP SPATSSSKRK NSSSSPFLPL  300
ATVPQSPRVP HEHQFIPEHP TGTGAHFYDR SSSKQQQQQP QQQSLELSTR ISPLSFLPPA  360
GVETFGNGFC TESRQAPTLG LGFPPPSDMR FPADFLPRTG MPFPPPEVQL LPPVRPPMSE  420
KAIAGTERLI MLHEQEQARL ERKRKAEEAR IAKEHEAQDK RMKKEMERQE AMRRKKEDQE  480
RKESEKVHRE KQKELERLAR EKAREEERLQ RQHKKEYERM EKLLQKENQR VAKLRQKEEM  540
RREKEATKLR AAYERATAKK LAKLSTGLID DEQLELMQMG AFVQGLISGS EFDPNKSKKM  600
TLW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	462	RKRKAEEARIAKEHEAQDKRMK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002983629.2	0.0	homeobox-DDT domain protein RLT1
TrEMBL	D8SJX2	0.0	D8SJX2_SELML; Uncharacterized protein
STRING	EFJ15125	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	3e-22	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	422900
Entrez Gene	9643794

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]