PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

421852

Common Name

SELMODRAFT_421852

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 248aa MW: 27708.1 Da PI: 4.1197

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
421852	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.8e-07	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C ++F+ + +Lk+H+ +H 421852 125 YPCSICERVFKYSWHLKNHQLVH 147 99******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.94E-6	122	150	No hit	No description
PROSITE profile	PS50157	11.489	125	152	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-6	125	150	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0059	125	147	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	127	147	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MTTINNEGLG SLRDEKRKRV SGRPEVAPSI DALNAGDDQQ SKQMVVYADT SGFLRRQEEE 60 AKDGQEEVFM LELNPVSDPV EEDDDDNNDE EEEEKDDDDE ELLPGSSDRH CKARKRTRTY 120 KTGIYPCSIC ERVFKYSWHL KNHQLVHSDE LQEEKEIHSM DKEELVPFGS PSLCFYSEEV 180 AIDCEDQDEK TLLEVDSFVS SSLVLGEADQ AEDSHIQPSP TCQLADSPIG SARSGGISSD 240 SGRNSKI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974624.2	8e-57	cell wall integrity transcriptional regulator CAS5
Refseq	XP_024535222.1	8e-57	cell wall integrity transcriptional regulator CAS5
TrEMBL	D8SGK0	0.0	D8SGK0_SELML; Uncharacterized protein
STRING	EFJ16212	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	421852
Entrez Gene	9661029

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]