PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

421249

Common Name

SELMODRAFT_421249

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 325aa MW: 36364.8 Da PI: 9.8401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
421249	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	157	206	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h Er RR+ +N f Lr+llP++ s K +K++++ + ++YI+ L 421249 157 QRESHIWSERERRKGMNRLFCILRSLLPEP----SSKTDKSTVVGEIIKYISFL 206 7999***********************9....9***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.564	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-13	156	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.85E-10	157	211	No hit	No description
Pfam	PF00010	1.1E-9	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-14	157	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MASRCFHPSV YLDGCSEFSA PGPCEYTPPK LHIELEQEER IPLSSLIVAA GIEKRELAMD 60 NTFFQTESWQ PAQFAFGSSN PLSVTLDSLD ARNQGSSSVF QAMTIGKEAD LRIPGYNTLK 120 GQQQLTTRPS ISSCRSQVLE KALGVQQKWP GKRPLAQRES HIWSERERRK GMNRLFCILR 180 SLLPEPSSKT DKSTVVGEII KYISFLRLSI EELTKKKSDI LQRAARVSQS TSGDSGAIIV 240 NQRSQETLPS FQSVVFVSTP LVALHVCRDN VFLNMTCSRR ASLFVNILWA MRQHQLILLN 300 ATVSAHGSQI IYCIHSKVRK MVRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981722.2	0.0	transcription factor ORG3
TrEMBL	D8SEH0	0.0	D8SEH0_SELML; Uncharacterized protein
STRING	EFJ17204	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	4e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	421249
Entrez Gene	9633920

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]