PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

420712

Common Name

SELMODRAFT_420712

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CPP

Protein Properties

Length: 462aa MW: 50711 Da PI: 8.5059

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
420712	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	37.5	4.7e-12	95	135	1	42
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k++k+CnCk+++Clk+YCeCfa+g++C+ C+C +C+N+ e+ 420712 95 KKCKQCNCKNTRCLKLYCECFASGTYCDG-CNCLNCCNNVEN 135 589************************.******9875 PP
2	TCR	52.1	1.3e-16	176	215	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cs++CkC dCkN + 420712 176 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCVDCKNYD 215 589***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.8E-12	95	135	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.497	96	216	IPR005172	CRC domain
Pfam	PF03638	3.0E-8	98	132	IPR005172	CRC domain
SMART	SM01114	6.5E-20	176	217	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.6E-13	179	214	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MQLNGIKADQ FDKDEKPVIP AHLDMNGSSL VTMQGPGKLP LYSSSRLSRT SQALPSSQVP 60 PAQPGEPGRK PVRQLNFSSI LPRPPVYELK EVAAKKCKQC NCKNTRCLKL YCECFASGTY 120 CDGCNCLNCC NNVENEAVRQ EAVEVTLERN PNAFRPKIAN TQHAIRDSAD DMRLGKHNKG 180 CNCKKSGCLK KYCECFQANI LCSDNCKCVD CKNYDSSDER RALYQPDYSQ STYHGGPPPY 240 TTSATGSLAC VSSSPMPAKK RRTSDLVFVG ESLKVQQPIY RTLQGIQDAK LSGSMLPPNS 300 SLSAKTIQTS LLAGVVQPET VSDLCNLLVM ASAEAAKAMI ASGPVSKRPA ENGQEAGSGQ 360 GDEDIREKRP MSPGTLALMC DEQDPLFTPA THGDYDKELA AEQERLILEE FRDCLRKIIT 420 VGRKRGTLLK FSQTLPLYYL QKPQGASFWQ RLFKRIASPR V*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MQLNGIKADQ FDKDEKPVIP AHLDMNGSSL VTMQGPGKLP LYSSSRLSRT SQALPSSQVP  60
PAQPGEPGRK PVRQLNFSSI LPRPPVYELK EVAAKKCKQC NCKNTRCLKL YCECFASGTY  120
CDGCNCLNCC NNVENEAVRQ EAVEVTLERN PNAFRPKIAN TQHAIRDSAD DMRLGKHNKG  180
CNCKKSGCLK KYCECFQANI LCSDNCKCVD CKNYDSSDER RALYQPDYSQ STYHGGPPPY  240
TTSATGSLAC VSSSPMPAKK RRTSDLVFVG ESLKVQQPIY RTLQGIQDAK LSGSMLPPNS  300
SLSAKTIQTS LLAGVVQPET VSDLCNLLVM ASAEAAKAMI ASGPVSKRPA ENGQEAGSGQ  360
GDEDIREKRP MSPGTLALMC DEQDPLFTPA THGDYDKELA AEQERLILEE FRDCLRKIIT  420
VGRKRGTLLK FSQTLPLYYL QKPQGASFWQ RLFKRIASPR V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-31	88	225	2	132	Protein lin-54 homolog
5fd3_B	6e-31	88	225	2	132	Protein lin-54 homolog
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00269	DAP	Transfer from AT2G20110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024541906.1	0.0	protein tesmin/TSO1-like CXC 5
Refseq	XP_024543469.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	D8SCV7	0.0	D8SCV7_SELML; Uncharacterized protein
STRING	EFJ17775	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1469	17	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-76	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	420712
Entrez Gene	9647018

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]