PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

419297

Common Name

SELMODRAFT_419297

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 293aa MW: 32149.5 Da PI: 4.5207

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
419297	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	56.6	5.4e-18	52	116	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg +r k+ 419297 52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116 67889**************86533444*******************977778888887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-10	51	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-26	52	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.333	55	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MARASKRSRE DDGIMVLKKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGGD 120 KITPVVQEEF VGESSQVMGD CVAGFDQTTY WEQGHGLGDC AQPLSHEAFD QNSCWELLPA 180 LGQGPVGDCV QEVFAQASEL GDGVFADQVS QEFVGGVQAL GQGPVGDCVQ EVFAQTSELG 240 DGVFADQVSQ EFVGGVQGGD VQTNCWGQPQ EFNDVFLDIE GFLADLPEIQ AC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	LKKKRRL
2	17	21	KKKRR
3	17	22	KKKRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002992665.1	1e-177	uncharacterized protein LOC9630524
TrEMBL	D8S8G7	0.0	D8S8G7_SELML; Uncharacterized protein
STRING	EFJ19408	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-13	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	419297
Entrez Gene	9635165

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]