PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 417629 | ||||||||
Common Name | SELMODRAFT_417629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 278aa MW: 31229.5 Da PI: 8.8077 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.9 | 7.4e-31 | 41 | 91 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtpeLHerFveav+qLGG+ekAtPk+++++m+vkgLtl+h+kSHLQ 417629 41 KPRLRWTPELHERFVEAVTQLGGAEKATPKSVMRIMGVKGLTLYHLKSHLQ 91 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.392 | 38 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 39 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-14 | 40 | 94 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-21 | 41 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-8 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-25 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MYQVKNFSPG TNFMSQQQQQ QPTLYTGLSV EQAKISASEP KPRLRWTPEL HERFVEAVTQ 60 LGGAEKATPK SVMRIMGVKG LTLYHLKSHL QFLMLCFHQK FRLGKQLNKD TNVANRNASI 120 VSYNTPNAQD LIAQQGHLSS SSSDSQITEA LRLQMEVQKK LHEQLEVQRH LQLRIEAQGK 180 YLQALLEKAR ETFSVGGQDL NASVKLELCK AASSAETTLE QQLLFAREQR LQSHNLHQPQ 240 AHHIMGNKME QGLDLNCKEV NGLDLNEFGW AAGPTES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 41 | 91 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024538553.1 | 1e-178 | protein PHR1-LIKE 2 | ||||
Swissprot | Q94A57 | 8e-56 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | D8S325 | 0.0 | D8S325_SELML; Uncharacterized protein | ||||
STRING | EFJ21192 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 5e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 417629 |
Entrez Gene | 9657197 |
Publications ? help Back to Top | |||
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