PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 417628 | ||||||||
Common Name | SELMODRAFT_417628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 167aa MW: 19412.2 Da PI: 9.0114 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 6.8e-12 | 62 | 143 | 2 | 83 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 k lt+ dv +++ l+++ + ++ + e++ + + de+g +We+ + +k++++ + t+ W ++v++n L+egD+v F+ 417628 62 GKRLTKGDVDTLDTLIFSVHEESKLprlD--DDEKIPMEFVDEKGAVWEFGY--KKGKRGpSLVTNQWIQYVRENSLQEGDIVCFY 143 57788889999998888888866669554..4456679999***********..77777778999********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-13 | 58 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.55E-16 | 59 | 161 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.9E-15 | 59 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0018 | 61 | 161 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.628 | 61 | 166 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-9 | 63 | 143 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MVDQELREPK RRKVDGDEGV NLGKYSCHQM DSTSSSYTKW RPQKYDRPLN ITDKAHWFPL 60 FGKRLTKGDV DTLDTLIFSV HEESKLPRLD DDEKIPMEFV DEKGAVWEFG YKKGKRGPSL 120 VTNQWIQYVR ENSLQEGDIV CFYKKMLMNP LAPKFGITFF KIPKSN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8S324 | 1e-121 | D8S324_SELML; Uncharacterized protein | ||||
STRING | EFJ21191 | 1e-121 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 4e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 417628 |
Entrez Gene | 9656456 |
Publications ? help Back to Top | |||
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