PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 417553 | ||||||||
Common Name | SELMODRAFT_417553, WOX5-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 269aa MW: 29087.2 Da PI: 6.1786 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.7 | 1.3e-15 | 64 | 122 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R++++++ql +Lee+++k ps+e +e+A+ + ++e++V++WFqN++ +ek+ 417553 64 QRWRPNSQQLGILEEFYAKGTPPSQENVTEIAELIghhgPVDESKVYYWFQNKKSREKR 122 8**********************************99999******************7 PP | |||||||
2 | Wus_type_Homeobox | 69.8 | 4.6e-23 | 62 | 124 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a++RW P+++Q+ iLee y +G+ P++e++++i++ + ++G +++ V+yWFQN+k+Re++k+ 417553 62 AQQRWRPNSQQLGILEEFYAKGT-PPSQENVTEIAELIGHHGPVDESKVYYWFQNKKSREKRKR 124 689*******************7.699***********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-14 | 56 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.503 | 59 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-6 | 61 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-12 | 62 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-13 | 64 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.81E-6 | 65 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MRRCEQQAAS SPASSESDQI DQERDINTEL LELKALHMHH RSRRKHIEIS SVPAPPAPTR 60 PAQQRWRPNS QQLGILEEFY AKGTPPSQEN VTEIAELIGH HGPVDESKVY YWFQNKKSRE 120 KRKRRRIEEA NAASGASASS SPAAASATAA FQQDLSSSAP SASASASSGS EQLHHPAAQS 180 YAAAQIVIDG GVVSIIDDKS PFDLVGHFGD GAALFDPALG RIVPTNERGV TLEPLESRAY 240 TLVWPIPLAH EASQLGSFAN LEDPPWSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 125 | KRKRRR |
2 | 121 | 125 | RKRRR |
3 | 122 | 126 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024538362.1 | 1e-117 | WUSCHEL-related homeobox 11 | ||||
TrEMBL | D8S2U5 | 0.0 | D8S2U5_SELML; Uncharacterized protein WOX5-1 | ||||
STRING | EFJ20992 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-06 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | 417553 |
Entrez Gene | 9656417 |
Publications ? help Back to Top | |||
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