PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 417475 | ||||||||
Common Name | KN5-2, SELMODRAFT_417475 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HB-other | ||||||||
Protein Properties | Length: 106aa MW: 12364.4 Da PI: 10.9694 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 31 | 78 | 10 | 54 |
HHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +e++F+ k++ p+ +e+ LA+++ L+ rq+ +WF N+R + 417475 31 YIRGLMEDCFKkkkKKKFPKGDEKSNLAQSTWLKPRQINNWFINQRKR 78 55667999**95544889****************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.997 | 19 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-7 | 21 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-13 | 25 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 33 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.0E-10 | 48 | 78 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 4.73E-7 | 48 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MEKADLGEVD TDLDPLAGNK ELMMKTLMKS YIRGLMEDCF KKKKKKKFPK GDEKSNLAQS 60 TWLKPRQINN WFINQRKRHW PQAARGESSQ QRHSKSRKLS TTKKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002977601.2 | 1e-71 | homeobox protein knotted-1-like 12 | ||||
TrEMBL | D8S2C3 | 5e-71 | D8S2C3_SELML; KNOX transcription factor | ||||
STRING | EFJ21605 | 8e-72 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-10 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | 417475 |
Entrez Gene | 9639350 |
Publications ? help Back to Top | |||
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