PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

417284

Common Name

SELMODRAFT_417284

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 359aa MW: 40583.3 Da PI: 8.3199

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
417284	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.8e-16	275	346	14	90
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++lp +++++++ +++ +++++d+sg +W+++ +++ ++ v+++GWk F+ ++L gD++vF+ +++s++ 417284 275 YVMTLPSNYCKKMM--PHGRAEVIVRDRSGHQWRMRWNWTMQP---VIGAGWKAFCVHHELVKGDVLVFQKENSSSE 346 5689****9996..446679***********666665...9*********************5543444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-18	256	357	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.85E-22	260	356	No hit	No description
SuperFamily	SSF101936	3.14E-17	261	352	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.914	262	358	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-4	262	358	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-12	274	352	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MTGKIRSPLS ATEFLHIGIA NATVSEAPEL FAGCEVATYL TGKVPWLELP SEIGEYYRSS 60 GAGNLDLLER CDLFSPDQKP GNHSTWHVLD AMNTSPIAHF KKYKLNALID RDMSSLMLTH 120 DGVLKVIWNW NDYCNEWGVN CEDVFQAYTL APKCGKHLVG SVEGPKFRTR SELGMENAGS 180 LMHKHYPRLL TSQALQALIK GLLGKSYNTV EGSYEEDSPL SSYIPSNQQR QRRNREELPG 240 SHEALQAAQE YQQHLAKKSR STIKVLNQCC VSGTYVMTLP SNYCKKMMPH GRAEVIVRDR 300 SGHQWRMRWN WTMQPVIGAG WKAFCVHHEL VKGDVLVFQK ENSSSEMITF RVEIFKRQ*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MTGKIRSPLS ATEFLHIGIA NATVSEAPEL FAGCEVATYL TGKVPWLELP SEIGEYYRSS  60
GAGNLDLLER CDLFSPDQKP GNHSTWHVLD AMNTSPIAHF KKYKLNALID RDMSSLMLTH  120
DGVLKVIWNW NDYCNEWGVN CEDVFQAYTL APKCGKHLVG SVEGPKFRTR SELGMENAGS  180
LMHKHYPRLL TSQALQALIK GLLGKSYNTV EGSYEEDSPL SSYIPSNQQR QRRNREELPG  240
SHEALQAAQE YQQHLAKKSR STIKVLNQCC VSGTYVMTLP SNYCKKMMPH GRAEVIVRDR  300
SGHQWRMRWN WTMQPVIGAG WKAFCVHHEL VKGDVLVFQK ENSSSEMITF RVEIFKRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8S2Q4	0.0	D8S2Q4_SELML; Uncharacterized protein
STRING	EFJ21500	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	417284
Entrez Gene	9655722

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]