PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 415291
Common NameSELMODRAFT_415291
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HB-other
Protein Properties Length: 337aa    MW: 37712.2 Da    PI: 4.9193
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
415291genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-102803151954
               HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                + ++yp+++++  LA+++gL+ +q+ +WF N+R +
    415291 280 HQDHPYPNENQKSNLAQSTGLDPKQINNWFINQRKR 315
               5679******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-968112IPR005540KNOX1
PfamPF037901.7E-1570110IPR005540KNOX1
SMARTSM012561.5E-13116167IPR005541KNOX2
PfamPF037913.5E-20119165IPR005541KNOX2
PROSITE profilePS512138.8236256IPR005539ELK domain
PROSITE profilePS5007113.102256319IPR001356Homeobox domain
SMARTSM003891.3E-12258323IPR001356Homeobox domain
SuperFamilySSF466891.33E-17258326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28261320IPR009057Homeodomain-like
CDDcd000861.04E-11268320No hitNo description
PfamPF059205.4E-17276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGGYAPTKF ANMEEWLVEG LIEQAAEGLT TSPPPPPPPL APTSSMAAPR TEHEDMDPRG  60
SKVSLSDSEI MSAISGHPQY KELLRAHMNC YKVGASADLA AQMDELVRKR EFESAVKTSI  120
GVDPELDQFM VAYCNVLNAY EIELRRTFKE AIEFCKKQEH QLSVIAVSNI DVLSSGRETQ  180
VPCNAKVFNP DEQIFTETGA ENEDASETYE DFMEEAESGG IGEVDTDLDP LAGDKELKKV  240
LMKRYGGYIK GLTQEYLKKK KKGKLPKESR QQLLDWWSQH QDHPYPNENQ KSNLAQSTGL  300
DPKQINNWFI NQRKRHWNPQ AVRGESSQQR DAKSSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024538291.10.0homeobox protein knotted-1-like 1 isoform X2
TrEMBLD8RVM50.0D8RVM5_SELML; Uncharacterized protein
STRINGEFJ238020.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-57KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]