PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

415254

Common Name

SELMODRAFT_415254

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 575aa MW: 65928.5 Da PI: 4.8512

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
415254	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.5	1.1e-10	55	132	2	71
trihelix 2 WtkqevlaLiearr........emeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e+ Li+++r m + +W++ +kkm+ g++r k C+ +w+nl ++yk + + ++k 415254 55 WGDDETASLIDFKRedhlgkigAMRG-----SeemtlTTTDRWKRNAKKMQVAGMQRDWKACRTRWNNLCNDYKCVCDFQRKT 132 ***********9544433322222.....1344448899*******************************998888774 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.679	47	119	IPR017877	Myb-like domain
Pfam	PF13837	9.8E-10	53	135	No hit	No description
CDD	cd12203	2.02E-14	53	125	No hit	No description
Pfam	PF13359	1.9E-9	408	479	IPR027806	Harbinger transposase-derived nuclease domain

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MQFWFHNLEE QDDVAVEQGV EEDDRGDEEE GDDDEEGEAG VHVAKKMRKK RGKNWGDDET 60 ASLIDFKRED HLGKIGAMRG SEEMTLTTTD RWKRNAKKMQ VAGMQRDWKA CRTRWNNLCN 120 DYKCVCDFQR KTGNPNYFSL SHEDAKRLMP VKLNLKVFPV EYFNIMDEFL AKQASTSPTF 180 LADSDAPEEE AYEEDPADGV DPPGDATQDL ATVQPEETKD GSRENQRDAQ EEHGSFNNQA 240 ALIDALLRNK AFQSIIDDKT LVAQTLPDEE EDEDKLCRAV LSKRLDAGLW WVKPRCMTTW 300 SKFFMELYDP GRWKRKLRME KKTFFGLCGI LEAEICKQNT KFRRAVPVDV RLGVTLYKLF 360 KNTDYSDLSD KFGIGEATAH DIVVQTTAAI VKCLRYKIRF PETAAEGVCD AQKRFLSIYA 420 SWPGSVHDMR VFQNSRLCHK IQARELLTVP REFAFDEWIE PYLVGDKGYQ LQQHLMIPHL 480 GSLLTVTEAE IKPKYLPNII KSCCILHNFL IDVGETNINA EIKAWEKHIQ ALKEAEIFKD 540 YGDPIVAEGE PQEDLRGPED ARENCVIAMF KFNI*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MQFWFHNLEE QDDVAVEQGV EEDDRGDEEE GDDDEEGEAG VHVAKKMRKK RGKNWGDDET  60
ASLIDFKRED HLGKIGAMRG SEEMTLTTTD RWKRNAKKMQ VAGMQRDWKA CRTRWNNLCN  120
DYKCVCDFQR KTGNPNYFSL SHEDAKRLMP VKLNLKVFPV EYFNIMDEFL AKQASTSPTF  180
LADSDAPEEE AYEEDPADGV DPPGDATQDL ATVQPEETKD GSRENQRDAQ EEHGSFNNQA  240
ALIDALLRNK AFQSIIDDKT LVAQTLPDEE EDEDKLCRAV LSKRLDAGLW WVKPRCMTTW  300
SKFFMELYDP GRWKRKLRME KKTFFGLCGI LEAEICKQNT KFRRAVPVDV RLGVTLYKLF  360
KNTDYSDLSD KFGIGEATAH DIVVQTTAAI VKCLRYKIRF PETAAEGVCD AQKRFLSIYA  420
SWPGSVHDMR VFQNSRLCHK IQARELLTVP REFAFDEWIE PYLVGDKGYQ LQQHLMIPHL  480
GSLLTVTEAE IKPKYLPNII KSCCILHNFL IDVGETNINA EIKAWEKHIQ ALKEAEIFKD  540
YGDPIVAEGE PQEDLRGPED ARENCVIAMF KFNI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	317	RWKRKLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RVI4	0.0	D8RVI4_SELML; Uncharacterized protein
STRING	EFJ23965	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	415254
Entrez Gene	9629040

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]