PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 414222 | ||||||||
Common Name | SELMODRAFT_414222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 367aa MW: 40539 Da PI: 8.1136 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.3e-32 | 17 | 70 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+vkgLt++hvkSHLQ+YR+ 414222 17 PRLRWTPDLHHSFVSAVERLGGQERATPKLVLQLMDVKGLTIAHVKSHLQMYRS 70 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-31 | 13 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.412 | 13 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-15 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 17 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-8 | 18 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MARTGGAVRQ YVRSKLPRLR WTPDLHHSFV SAVERLGGQE RATPKLVLQL MDVKGLTIAH 60 VKSHLQMYRS MKSDENFNVN TQTDGESISD SQSPRAARFP GEFVLPDHDQ SERSSLYNNS 120 HLHPEPTVQG ALLATTNRYS PSIRCDTSSG PCIAWPGDVS DHGSGLCCFR EWQGREFHVT 180 DDALQAPELA DGFRRRKRSC TRECPKDTVS QASEVRNGGH AAAGYENFHF LDINRSSSSR 240 SDDKRETRQL LLSGTLSEPT REIHGAERSN VLDFRISLPG LLEDDGKLVD STLSLSLPNS 300 SSTATSSFSR HQQFPERPSP SPTASTCHWN QASAQRSSMA KPTFKLEHTS NRRPPNLDLT 360 MAIGAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 18 | 72 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 18 | 72 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 18 | 72 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 18 | 72 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002973839.1 | 0.0 | uncharacterized protein LOC9643034 isoform X1 | ||||
TrEMBL | D8RS22 | 0.0 | D8RS22_SELML; Uncharacterized protein | ||||
STRING | EFJ24794 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 8e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 414222 |
Entrez Gene | 9643034 |
Publications ? help Back to Top | |||
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