PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

413316

Common Name

SELMODRAFT_413316

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 365aa MW: 39288.3 Da PI: 8.3103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
413316	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	162	210	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++h Er+RR+ +N+ f++L +llP+ + K +K++i+ + + YI+ L 413316 162 RESHILSERQRRKGMNHLFSTLASLLPET----CSKSDKSTIVSEIISYIHLL 210 899***********************6....69*************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-13	157	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-12	158	215	No hit	No description
PROSITE profile	PS50888	14.577	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-14	162	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-10	162	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MPPRRRRSKS CSTATATATA AAPLPDGSIE QSIHQMLKSP LLEETRLPSF ELEDFPEWWP 60 AAATSSDQGA SPMATFESMD DPLLHFPQEL PETHSTLQGI CSPASSVLPC LTSPSPTQFV 120 APPALPPVGK AAGAGSKRSS RRTLAATHDL GVDTKSKSIS PRESHILSER QRRKGMNHLF 180 STLASLLPET CSKSDKSTIV SEIISYIHLL RKDLEDLDKK RSDVLRSASP RAAMAIKDSG 240 SPSPSICTTT NDRGSKNAGG GDDHPGMIQQ QSQQASNVIL SVCGSDAFIT MICASKNRSV 300 FSKVLLLLDH HKFRVLDANI STNASTTFHY FHVKALNSQL PKDALQRDLQ SLTASETKNE 360 TSSS*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MPPRRRRSKS CSTATATATA AAPLPDGSIE QSIHQMLKSP LLEETRLPSF ELEDFPEWWP  60
AAATSSDQGA SPMATFESMD DPLLHFPQEL PETHSTLQGI CSPASSVLPC LTSPSPTQFV  120
APPALPPVGK AAGAGSKRSS RRTLAATHDL GVDTKSKSIS PRESHILSER QRRKGMNHLF  180
STLASLLPET CSKSDKSTIV SEIISYIHLL RKDLEDLDKK RSDVLRSASP RAAMAIKDSG  240
SPSPSICTTT NDRGSKNAGG GDDHPGMIQQ QSQQASNVIL SVCGSDAFIT MICASKNRSV  300
FSKVLLLLDH HKFRVLDANI STNASTTFHY FHVKALNSQL PKDALQRDLQ SLTASETKNE  360
TSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002972966.1	0.0	transcription factor bHLH99
TrEMBL	D8RP23	0.0	D8RP23_SELML; Uncharacterized protein
STRING	EFJ26187	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	413316
Entrez Gene	9636542

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]