PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 413242
Common NameSELMODRAFT_413242
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 435aa    MW: 45871.5 Da    PI: 7.4344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
413242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-10386197
            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
            f k+ t+sd+ +   + +p +  e+h ++ + + t+ l +  gr W+v    + +s    +t+GWkeF   n L+egD +vF++++  +f   + +f
  413242  3 FAKTVTSSDMAA---MAIPGPVYERHRNE-AFGGTVALAH-GGRDWQVDA--SSGS----FTTGWKEFWLGNALNEGDCLVFRHQSAGRF--ALEIF 86
            667776666665...57*********755.5666888766.9******99..5555....89*********************7654554..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.73189IPR003340B3 DNA binding domain
CDDcd100172.47E-10286No hitNo description
SuperFamilySSF1019364.51E-12291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-13290IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-8386IPR003340B3 DNA binding domain
SMARTSM010190.0036389IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-12265364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-14267365IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-9270361No hitNo description
PROSITE profilePS508639.122272363IPR003340B3 DNA binding domain
SMARTSM010190.0016272363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSFAKTVTSS DMAAMAIPGP VYERHRNEAF GGTVALAHGG RDWQVDASSG SFTTGWKEFW  60
LGNALNEGDC LVFRHQSAGR FALEIFGSDG SAKEGGVGAP AYKSASSSSA LKRSRDDLPA  120
AMEVVVKDCL VHLEDGSSLK FVVTKIPPED PAGEPFTPLV SAAKASDALP RSSRMTRSSQ  180
KSVPAAKAPS PDAKDDSPAP KKAKIDSPKR TRKTRKQEEV SKMESSSEKN KEPTAKSSGK  240
KKKKNQDVPC DSPALLRAEA FKATIPSTNP STAIVMKKSC LHPCYYLTIP KDFAEKLPHE  300
NKMLTVESNA VKEPWDVKWL AANRAFSGGW NKVAQFYNLE LDDACVLEVL NKSGVRISVF  360
KADGSSSVAA NQSAPAIANG EIGGEVAEAG FATVDEGDAI AAMEKLCGDG GVKAKDGGGE  420
NGDGGDNENA GQVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199215PKKAKIDSPKRTRKTRK
2205210DSPKRT
3238244GKKKKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972701.10.0B3 domain-containing protein Os11g0197600
TrEMBLD8RNT60.0D8RNT6_SELML; Uncharacterized protein
STRINGEFJ259220.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.13e-08VERDANDI
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]