PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

413232

Common Name

SELMODRAFT_413232

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 443aa MW: 48133.4 Da PI: 6.8206

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
413232	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2e-10	372	414	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r RR+ri +++ L+el+P++ +K++ +++LekA++Y+k Lq 413232 372 AARHRRERISDRLKILQELVPNS-----TKVDLVTMLEKAINYVKFLQ 414 6799****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.91E-11	361	418	No hit	No description
PROSITE profile	PS50888	14.932	364	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	368	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-12	369	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-12	370	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	372	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MATAAASWVV EHCTQAAFED EHKTRICKVP DPSCSCSTSR EGSLDSEICF SSPPPQHQDV 60 VGGSSNHFLD FGIDHHQQHH PHLINLLSDH EWINFLRWRS WQIESSSSNS AAAMPVEFPP 120 SATDFSQLEL FPSNLEPGLS LPLTSFSSHH SHQSSTVLEQ FPQCLEIPSA ATPLSSCPTL 180 YDEAGYQDPF LAAFSSSTLH HAVDPNRRID NVDTNHALVA SNHPGIMTPC STDQGDKGII 240 SGKKAKPSSS STSVSNESVN RSSVVDGPRN PRKRRALEDR QDAASSKQQK KIGSSSSSPA 300 WAIDAAVALG SQEPIIHISH GGRTTPHDHE LILQQIAAAS SSSGKAPRVP ALNTNFKPRA 360 RQGSANDPQS IAARHRRERI SDRLKILQEL VPNSTKVDLV TMLEKAINYV KFLQLQVKVL 420 TSDDYWPSGA TWQNSSKADT AL*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MATAAASWVV EHCTQAAFED EHKTRICKVP DPSCSCSTSR EGSLDSEICF SSPPPQHQDV  60
VGGSSNHFLD FGIDHHQQHH PHLINLLSDH EWINFLRWRS WQIESSSSNS AAAMPVEFPP  120
SATDFSQLEL FPSNLEPGLS LPLTSFSSHH SHQSSTVLEQ FPQCLEIPSA ATPLSSCPTL  180
YDEAGYQDPF LAAFSSSTLH HAVDPNRRID NVDTNHALVA SNHPGIMTPC STDQGDKGII  240
SGKKAKPSSS STSVSNESVN RSSVVDGPRN PRKRRALEDR QDAASSKQQK KIGSSSSSPA  300
WAIDAAVALG SQEPIIHISH GGRTTPHDHE LILQQIAAAS SSSGKAPRVP ALNTNFKPRA  360
RQGSANDPQS IAARHRRERI SDRLKILQEL VPNSTKVDLV TMLEKAINYV KFLQLQVKVL  420
TSDDYWPSGA TWQNSSKADT AL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002972697.1	0.0	transcription factor PIF4
TrEMBL	D8RNS6	0.0	D8RNS6_SELML; Uncharacterized protein
STRING	EFJ25918	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3532	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	4e-30	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	413232
Entrez Gene	9636500

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]