PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 412693 | ||||||||
Common Name | SELMODRAFT_412693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 27742.3 Da PI: 10.5217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 142 | 191 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +grW AeIrd r r++lg+f+t+e+Aa+a++aa++kl+g+ 412693 142 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 191 89******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.8E-32 | 141 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.997 | 141 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 141 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-13 | 142 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 142 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-21 | 142 | 199 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.15E-18 | 142 | 197 | No hit | No description |
PRINTS | PR00367 | 1.8E-9 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MFCQRLTELI PALASLDRPS SPPLCKEEDV ASPAMELAMM AQWPSLSTAS VKDLDGIAAV 60 VGQRALFGGA SSSSSVSALN AGNGDGSSQA LSCDRRMQVP PLLEIAPLAI ASSSSSSPPP 120 EKSSSAPAGA SSSSISSSPR AFRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTPEDAARA 180 YDAAARKLRG AKARTNFSVP SSSIFPLPPL PHRPSTPSPS ISSRGAAPSS PALSWLDLKL 240 GSSGGSSSPK QRPSGGLPPT PSKLELD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 135 | 197 | 8 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024532550.1 | 1e-177 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | D8RL66 | 0.0 | D8RL66_SELML; Uncharacterized protein | ||||
STRING | EFJ26864 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 9e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 412693 |
Entrez Gene | 9640591 |
Publications ? help Back to Top | |||
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