PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 412681 | ||||||||
Common Name | SELMODRAFT_412681, SELMODRAFT_417246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 20674.7 Da PI: 5.0147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3.1e-14 | 24 | 70 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ K +Ka+ L +++e Ik+L 412681 24 KSHSEAERRRRERINKHLSTLRTLLPNT-----AKTDKASLLAEVIERIKEL 70 79*************************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.691 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-12 | 24 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 24 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.17E-5 | 24 | 75 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-15 | 25 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-13 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.80E-9 | 110 | 176 | No hit | No description |
SuperFamily | SSF55021 | 1.6E-5 | 110 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.0E-6 | 110 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTDLLSLCKS SAQADNAKAL AASKSHSEAE RRRRERINKH LSTLRTLLPN TAKTDKASLL 60 AEVIERIKEL KQQVAEISQF GPVPSDADEL DVDVMESPVD EGGKVLIKAS ICCADRPSLL 120 TDLVRTLKSL HLRTVKAEMA TMEGRTKNVF VMTIKDDAEL LEPTLACVEE ALKSVMEEPS 180 SKENQDDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002971937.1 | 1e-133 | transcription factor bHLH30 | ||||
Refseq | XP_002977306.1 | 1e-133 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 9e-47 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | D8RL49 | 1e-131 | D8RL49_SELML; Uncharacterized protein | ||||
STRING | EFJ21310 | 1e-132 | (Selaginella moellendorffii) | ||||
STRING | EFJ26854 | 1e-132 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 412681 |
Entrez Gene | 9639070 | 9640581 |
Publications ? help Back to Top | |||
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