PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 412483
Common NameSELMODRAFT_412483
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 382aa    MW: 42752.7 Da    PI: 10.2187
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
412483genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16156245196
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
             f k+lt sdv++++rl +p k+ +      ++++ + + de+g +We+++  +k++ + ++t+ W ++v+++ LkegD+v F+  ++ s++ +++++
  412483 156 FGKKLTASDVNSLHRLLIPVKYESMLP---NQKVLVEFVDEEGGVWELRC--KKGKTGSLITTHWIHYVREHSLKEGDTVCFY--KKvSSADPKFGI 245
             679******************954333...46789***************..999999*************************..444888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-16154235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-19154238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-17155245No hitNo description
PfamPF023622.2E-14156245IPR003340B3 DNA binding domain
SMARTSM010198.9E-9156249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039156251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKSKDFSGLL VLADAAALQP SFSKTFILRR KRSPRKSMLW RALLWFTADM STSEPDSNGK  60
RRVINQEAGQ LHEKKRRKVV VMDECQQLGQ KVKKLKMGDR DCGSRTDEVK DSSSSGEDGA  120
IQPAGDTKKT KCHKWRPRKR EDPLVTCDPS RWALLFGKKL TASDVNSLHR LLIPVKYESM  180
LPNQKVLVEF VDEEGGVWEL RCKKGKTGSL ITTHWIHYVR EHSLKEGDTV CFYKKVSSAD  240
PKFGISFART SGKAKDGHGV VIRGDQIPVY LLRGSTVLMH TQALVGLSCM IKLATEIRDE  300
ACQLCDCDVV RSHSIARTYE RVKANVRYHI CSNEKVCVVF VRIKLQRTTI NFVVVGTKVV  360
VAVVVALEAA GMERRAMESA G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15977KRRVINQEAGQLHEKKRRK
27377KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8RLM10.0D8RLM1_SELML; Uncharacterized protein
STRINGEFJ267480.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.19e-10B3 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]