PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

412243

Common Name

SELMODRAFT_412243

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 284aa MW: 33144 Da PI: 9.9037

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
412243	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.8	7.8e-10	51	101	18	68
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 e ++rr k +W++vs+++ +g++ p qC++ we + k++ kik e 412243 51 EVAFRRHKTTSIHWQQVSDYCLTHGVNHLPGQCQSHWEYIYKEFNKIKSYE 101 6789999999*************************************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGEQQLNDLE IVFSTQCQQK FLYDGSQFSR GNFTAPTPPK PLKPIRNRGS EVAFRRHKTT 60 SIHWQQVSDY CLTHGVNHLP GQCQSHWEYI YKEFNKIKSY EYHVPTGKKI DLGINVFTTY 120 IPKGNNNNLE KHSSGRLRKK SCTQLVEQLA RVLCDNNKEE FMERTLVVNS QMVKSVDQVA 180 QALFAIVDSL KHKWIRVRLK GKKELCKMTT ARVSPINLAM LWGFKMRFFP RDEGRKIHTG 240 SKDCCVIFDH PGTHNLPDNI QAFYHPPYHQ IHWEFQRIHW ETK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RKI9	0.0	D8RKI9_SELML; Uncharacterized protein
STRING	EFJ27244	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	412243
Entrez Gene	9639953

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]