PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 411646
Common NameSELMODRAFT_411646
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 483aa    MW: 54061.1 Da    PI: 10.4664
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
411646genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.94.5e-07235285154
     AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
             s+y GV+++k+ +rW+ +I+       k+k++++g+   +e  a+ +++a  k++
  411646 235 SRYVGVSYYKRIKRWETHIWG----TrKSKQIYVGSCSNEEAGARIYDRAYIKFR 285
             78****************866....1346**********7777888888887765 PP
2AP230.21.2e-09344394155
     AP2   1 sgykGVrwdkkrgr.WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV+  k r+  W A+I        ++ ++lg++ t eeAa+ +++a+ +++g
  411646 344 SKYRGVYLLKGRKVpWTASITLD-----SRAIRLGSYETQEEAARNYDRAAIRFFG 394
             89******998777*****9994.....5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-7235294IPR016177DNA-binding domain
PfamPF008472.8E-4235272IPR001471AP2/ERF domain
SMARTSM003804.3E-4236299IPR001471AP2/ERF domain
PROSITE profilePS5103211.351236302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-6236294IPR001471AP2/ERF domain
CDDcd000181.38E-10344403No hitNo description
SuperFamilySSF541718.5E-11344403IPR016177DNA-binding domain
PfamPF008473.6E-5344392IPR001471AP2/ERF domain
SMARTSM003802.5E-5345408IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-10345402IPR001471AP2/ERF domain
PROSITE profilePS5103213.749345402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MPRSNPVRSS RAARPPQPSR RRPPARMHRA SSWNELLAVE VLARGFQLAP GDFTAPDQDP  60
NIKDTRSAPK DRSPSPSPPL PALSTPDLAA IDNHDLAAPS LDDGADPAAT LTMSPVASAA  120
SRAPRRKQRR LAMDSQSSGI PSSSATVFKN QDESSSASSD GVPGGDDHPM TEEKPTSIAT  180
RAAALKTKRP PSGCSSSKVK RSNCVKKKKT VSKQEETSRK RKPPTCARRY AKKTSRYVGV  240
SYYKRIKRWE THIWGTRKSK QIYVGSCSNE EAGARIYDRA YIKFRDKSCP NFPYSDYWIN  300
LPDKDFINML RNMSRGESLV WFAPELLESG AGSPFTRETR PRASKYRGVY LLKGRKVPWT  360
ASITLDSRAI RLGSYETQEE AARNYDRAAI RFFGKAKALN FAYEDYTHEM PQWITLSKEE  420
FIYYIRNSAQ SSKKRKFKVH TAQRAVYDRK AKQKGIDVCE VNEAIPHYID EKGIGVVNED  480
TI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206221KKKTVSKQEETSRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024534828.16e-79floral homeotic protein APETALA 2-like
TrEMBLD8RIK90.0D8RIK9_SELML; Uncharacterized protein
STRINGEFJ281080.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-19AP2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]