PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411161

Common Name

SELMODRAFT_411161

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 436aa MW: 48568.3 Da PI: 8.9716

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411161	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.7e-12	267	314	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h +Er+RR+r ++++++Lr+l+P ++ +K ++L+ A++++++Lq 411161 267 RTVHIDAERNRRRRHKDSISRLRSLIPFK---TK---DKLSVLQGAIDHMQYLQ 314 899***********************8...44...5666**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	4.61E-5	17	148	IPR029016	GAF domain-like
Pfam	PF14215	2.7E-14	53	139	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	8.51E-13	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-12	263	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.79E-12	263	318	No hit	No description
PROSITE profile	PS50888	10.887	265	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	267	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-9	271	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MMILPLSVLS VSEQRLAALV NYIGWSYIVV WSLPQRDLVW QQGLWPAGSS FQQALFYTAY 60 KSCQFPFGHG HAGIAAIRRE HVWVTGVNVT NTSVLEQRDF LQATIIQSLL CIPLLDGVLE 120 IGSTETILET DSLLQTIRTF LYAAPVALPV STEHPSTSTS SIFSQSPSEA SLDIPGLHHQ 180 SYTTSDWTTI YQATSSLGTQ FDTSSATAFR KWDPLQQKSM AIPTTSQAMI KRMLLALAQI 240 EEVRKRARGL AQGPTQTMSG GEDARTRTVH IDAERNRRRR HKDSISRLRS LIPFKTKDKL 300 SVLQGAIDHM QYLQRRVAQL ENSKATTEET AGPGAEIGAI KTELTTSDDR DELSVNALDD 360 EGTFAIRIHR RRPQRQDVML QLLNYLWSLG LSVTSIDSAV TENSFRAALV AKLRNNSNRK 420 IQPTDIETFL NKLLI*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MMILPLSVLS VSEQRLAALV NYIGWSYIVV WSLPQRDLVW QQGLWPAGSS FQQALFYTAY  60
KSCQFPFGHG HAGIAAIRRE HVWVTGVNVT NTSVLEQRDF LQATIIQSLL CIPLLDGVLE  120
IGSTETILET DSLLQTIRTF LYAAPVALPV STEHPSTSTS SIFSQSPSEA SLDIPGLHHQ  180
SYTTSDWTTI YQATSSLGTQ FDTSSATAFR KWDPLQQKSM AIPTTSQAMI KRMLLALAQI  240
EEVRKRARGL AQGPTQTMSG GEDARTRTVH IDAERNRRRR HKDSISRLRS LIPFKTKDKL  300
SVLQGAIDHM QYLQRRVAQL ENSKATTEET AGPGAEIGAI KTELTTSDDR DELSVNALDD  360
EGTFAIRIHR RRPQRQDVML QLLNYLWSLG LSVTSIDSAV TENSFRAALV AKLRNNSNRK  420
IQPTDIETFL NKLLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF338144	2e-16	Selaginella moellendorffii mitochondrion part 2, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530835.1	1e-154	transcription factor TT8
TrEMBL	D8RGR8	0.0	D8RGR8_SELML; Uncharacterized protein
STRING	EFJ28636	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12363	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	411161
Entrez Gene	9646665

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]