PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411158

Common Name

SELMODRAFT_411158

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 838aa MW: 92139 Da PI: 7.5105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411158	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	669	716	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h +Er+RR+r ++++++Lr+l+P ++ +K ++L+ A+++ ++Lq 411158 669 RTIHIDAERNRRRRHKDSISRLRSLIPFK---TK---DKLSVLQGAIDHRQYLQ 716 78899*********************8...54...56669***9998888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50280	12.329	127	272	IPR001214	SET domain
SMART	SM00317	1.1E-7	127	278	IPR001214	SET domain
SuperFamily	SSF82199	2.88E-18	135	299	No hit	No description
Gene3D	G3DSA:2.170.270.10	1.2E-14	135	299	No hit	No description
Pfam	PF00856	7.7E-12	137	271	IPR001214	SET domain
Pfam	PF14215	7.7E-14	455	541	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	1.24E-10	663	725	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.61E-10	665	720	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-10	665	730	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.125	667	715	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	669	716	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-7	673	721	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MAASQLVLTD GKLTLNVRWL FQKARITLVT GEETTATNAK LAKKASLENF SRCVLHERVK 60 RSDGSWGRSR SCAVIGATSR PGNSMVKPLV LRCDWLNVGA GNSTVKIAHP EREERMIGIS 120 FSPYLSEDVQ IQAVGEGRGI CAICDIDPGT LVLLESALLS AKEIGKDSPI HVLQCLGDVS 180 QLHDGTTRAY STPPDFSAAI ADIDPEHAKR VWDTNVFVNA ASQTHVLGRY TSLINHSCSP 240 NAYVAYLANS TVLCVRTTKP VSAGDEISIA YINVLAPAFQ RHQELRPFGI KSCYCSRCKE 300 EDTLPTTITN LLESHASSFE KKEERTPEDT DRKFEALTAI VNAAEKEGLR GVVYPMLGIL 360 ALELGLWEFY LEPASNIGLA CNLAALLCLL IGFGSLDALR HSFGLFPKYL IVNAIGRRDL 420 RRVAPAGTRD ETQEWFIASV ACGDEGVPLI CSFQQALFYT AYKSCQFPFG HGHAGIAAIR 480 REHVWVTGVN VTNTSVLEQR DFLQATIIQS LLCIPLLDGV LEIGSTETIL ETDSLLQTIR 540 TFLYAAPVAL PVSTEHPSTS TSSIFSQSPS EASLDIPGLH HQSYTTSDWT TIYQATSSLG 600 TQFDTSSATA FRKWDPLQQK SMAIPTTSQA MIKRMLLALA QIEEVRKRAR GLAQGPTQTM 660 SGGEDARTRT IHIDAERNRR RRHKDSISRL RSLIPFKTKD KLSVLQGAID HRQYLQTRVA 720 QLENSKATTE ETAGPGAEIG AIKTELTTSD DRDELSVNAL DVEGTFAIRI YRRRPQRQDV 780 MLQLLNYLWS LGLSVTSIDS AVTENSFRAA LVAKPRNNSN RKIQPTDIET FLNKLLI*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MAASQLVLTD GKLTLNVRWL FQKARITLVT GEETTATNAK LAKKASLENF SRCVLHERVK  60
RSDGSWGRSR SCAVIGATSR PGNSMVKPLV LRCDWLNVGA GNSTVKIAHP EREERMIGIS  120
FSPYLSEDVQ IQAVGEGRGI CAICDIDPGT LVLLESALLS AKEIGKDSPI HVLQCLGDVS  180
QLHDGTTRAY STPPDFSAAI ADIDPEHAKR VWDTNVFVNA ASQTHVLGRY TSLINHSCSP  240
NAYVAYLANS TVLCVRTTKP VSAGDEISIA YINVLAPAFQ RHQELRPFGI KSCYCSRCKE  300
EDTLPTTITN LLESHASSFE KKEERTPEDT DRKFEALTAI VNAAEKEGLR GVVYPMLGIL  360
ALELGLWEFY LEPASNIGLA CNLAALLCLL IGFGSLDALR HSFGLFPKYL IVNAIGRRDL  420
RRVAPAGTRD ETQEWFIASV ACGDEGVPLI CSFQQALFYT AYKSCQFPFG HGHAGIAAIR  480
REHVWVTGVN VTNTSVLEQR DFLQATIIQS LLCIPLLDGV LEIGSTETIL ETDSLLQTIR  540
TFLYAAPVAL PVSTEHPSTS TSSIFSQSPS EASLDIPGLH HQSYTTSDWT TIYQATSSLG  600
TQFDTSSATA FRKWDPLQQK SMAIPTTSQA MIKRMLLALA QIEEVRKRAR GLAQGPTQTM  660
SGGEDARTRT IHIDAERNRR RRHKDSISRL RSLIPFKTKD KLSVLQGAID HRQYLQTRVA  720
QLENSKATTE ETAGPGAEIG AIKTELTTSD DRDELSVNAL DVEGTFAIRI YRRRPQRQDV  780
MLQLLNYLWS LGLSVTSIDS AVTENSFRAA LVAKPRNNSN RKIQPTDIET FLNKLLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF338144	3e-16	Selaginella moellendorffii mitochondrion part 2, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RGR5	0.0	D8RGR5_SELML; Uncharacterized protein
STRING	EFJ28635	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12363	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	411158
Entrez Gene	9646663

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]