PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 410097
Common NameSELMODRAFT_410097
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 274aa    MW: 30862 Da    PI: 10.3831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
410097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-057493322
             ETTTTEEESSHHHHHHHHHH CS
  zf-C2H2  3 CpdCgksFsrksnLkrHirt 22
             C+dCg  F+++ +L++H+r+
   410097 74 CSDCGAKFRDHQQLHQHQRS 93
             ******************97 PP
2zf-C2H210.80.0015110133123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              ++C  Cg  F ++ +L +H  + H
   410097 110 FSCFVCGAKFDSPQYLDQHFLLkH 133
              89*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-570129No hitNo description
SMARTSM003551.77297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0557297IPR007087Zinc finger, C2H2
SMARTSM003550.13110133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349110138IPR007087Zinc finger, C2H2
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.104.7E-4160262IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPRRHNHLLH HAILSTVHPA YEKRLYCKNE ERSKKHGRSF TSNMLQHFRD SHGQSSGSTK  60
APSTPTPTPK VLACSDCGAK FRDHQQLHQH QRSSAAHMKV SGPWDGGKYF SCFVCGAKFD  120
SPQYLDQHFL LKHAGTTRNE EESWHTSVPN IQAAKSPPPR VQSGHRVKRF ADYREKLMAQ  180
RGSRGEKIGK NGNEVLRYHG TTVLCRLGTP QQQSLCSNLS CSLCNIILAG FKKKKAEVDG  240
FLRFGPTATS SKANYYVKAY CSCVRFWPGW FSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024534689.11e-123tankyrase-like isoform X1
RefseqXP_024534690.11e-123tankyrase-like isoform X1
RefseqXP_024534691.11e-123tankyrase-like isoform X1
TrEMBLD8RDG50.0D8RDG5_SELML; Uncharacterized protein
STRINGEFJ300180.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.16e-08C2H2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]