PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

409967

Common Name

SELMODRAFT_409967

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 500aa MW: 54083.5 Da PI: 7.1259

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
409967	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	421	464	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri +++ L+el+P+ K++ +++LekA++Y+k Lq 409967 421 IAARQRRERISDRLKILQELIPNG-----SKVDLVTMLEKAINYVKFLQ 464 567******************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.792	414	463	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	419	474	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-12	419	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-12	420	468	No hit	No description
SMART	SM00353	3.8E-12	420	469	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	422	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MGIVCEPLFF GGDLTRRSCR RRQEVACRSS KGDCDPGGGT GDSCLTSDHE AAAAAAAEDC 60 STELETAPIR GSCSVNDSSA GSSGGSSSSW TWQSNSPGRI VENVLEQVQS KASSPSSSPA 120 AAEAAVQGFS EGERAVENWH DLLQATDLRD DGIETLPSLV SAAFPSDQEQ HKARFPSWDN 180 RPSKLSSHHQ ADYGCFMQQD GAAFGSSSNV FRPPPQFVDS HNLSLSSQAM LFERQHQHQQ 240 EFNSFSSHVS YPPGGTFNCH DGVAATTGNS RSNLELLLGS SAIDFKQPQQ EEQQITSQCQ 300 GAFGGSWSAN GNLGINGQAA RRNHTGDGGA GQSQAQQLQS IFLPGQGSSR KPGIKTVEEM 360 SRRCSLQDNN RDAKRHKGST AQRTRFGASS KRGNSHKREP ALNTNLKPRA KQGCANDPQS 420 IAARQRRERI SDRLKILQEL IPNGSKVDLV TMLEKAINYV KFLQLQVKVL MNDEYWPPKG 480 DGEEDYPVSQ KYLFLSKIS*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MGIVCEPLFF GGDLTRRSCR RRQEVACRSS KGDCDPGGGT GDSCLTSDHE AAAAAAAEDC  60
STELETAPIR GSCSVNDSSA GSSGGSSSSW TWQSNSPGRI VENVLEQVQS KASSPSSSPA  120
AAEAAVQGFS EGERAVENWH DLLQATDLRD DGIETLPSLV SAAFPSDQEQ HKARFPSWDN  180
RPSKLSSHHQ ADYGCFMQQD GAAFGSSSNV FRPPPQFVDS HNLSLSSQAM LFERQHQHQQ  240
EFNSFSSHVS YPPGGTFNCH DGVAATTGNS RSNLELLLGS SAIDFKQPQQ EEQQITSQCQ  300
GAFGGSWSAN GNLGINGQAA RRNHTGDGGA GQSQAQQLQS IFLPGQGSSR KPGIKTVEEM  360
SRRCSLQDNN RDAKRHKGST AQRTRFGASS KRGNSHKREP ALNTNLKPRA KQGCANDPQS  420
IAARQRRERI SDRLKILQEL IPNGSKVDLV TMLEKAINYV KFLQLQVKVL MNDEYWPPKG  480
DGEEDYPVSQ KYLFLSKIS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	423	428	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024529637.1	0.0	transcription factor bHLH123
TrEMBL	D8RD17	0.0	D8RD17_SELML; Uncharacterized protein
STRING	EFJ29938	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3532	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	5e-31	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	409967
Entrez Gene	9658889

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]