PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

409950

Common Name

SELMODRAFT_409950

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 276aa MW: 30303.8 Da PI: 4.6373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
409950	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20	1.2e-06	216	256	10	55
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + RR+ i+ +++ Lr ++P a ++ a++Le++++YI sL+ 409950 216 KSRRQTIKYKIQVLRNIIPGgA------GMEAASVLEETIRYITSLE 256 88***************966......59***********9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.204	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-5	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-8	213	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-8	216	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.64E-5	216	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MERVELDLSQ AELENVLHFS GAIGKEEVEF QFADRVKRPP PAKYVLFDQC GSEKVVVVHS 60 DGVSPVLPDA LVHDHNTTGS QTLQALLSSA GLQDKACDLQ VYKNAMAAAL LEFESSHSGE 120 ERLELFDSME QPLQANSGSW QENTDDLDAL MESDEEEVSE LNSASVTSAL TREDHSGGVE 180 LSGYLSSEGE TDGKGRSSRR SRDCRLSVRS TRSSKKSRRQ TIKYKIQVLR NIIPGGAGME 240 AASVLEETIR YITSLESMIL QFKAMKSEQP RPCCN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024529581.1	0.0	uncharacterized protein LOC9658878 isoform X1
TrEMBL	D8RCZ7	0.0	D8RCZ7_SELML; Uncharacterized protein
STRING	EFJ30228	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	409950
Entrez Gene	9658878

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]