PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 409196 | ||||||||
Common Name | SELMODRAFT_409196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 429aa MW: 44886.7 Da PI: 8.1995 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.4e-17 | 56 | 107 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++ GVr+++ +grWvAeI+d + ++ r +lg+f+ ae+Aa+a++ a+++l+g+ 409196 56 KKFVGVRQRP-SGRWVAEIKDST---QKLRLWLGTFDNAEDAARAYDDAARALRGA 107 589*******.7*********32...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-11 | 57 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 57 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 57 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-19 | 57 | 114 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.60E-15 | 58 | 113 | No hit | No description |
PRINTS | PR00367 | 1.4E-6 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDSSTAAAAV SSILPGAGSS VGVTVAGSPT AEEDSSSSRK NSRSSSGGGS KQQQKKKFVG 60 VRQRPSGRWV AEIKDSTQKL RLWLGTFDNA EDAARAYDDA ARALRGANTR TNFKLPGNAS 120 GRFSKATRML LQRVAMRSSG SEALKENQAL IASDNNNPGA VAVAGAFPHG LYHAAGGSSS 180 DSSPMQSFSS QQVPGKDKLA AVDPGKSIAP RALQQHQFYG TSPFGGGFQS PALATQQQIH 240 SKSVYGAFIE KLGKVPRPPP PPPAKHDLPY VNGYHGPLMS ENERAPQETT MMMEFQDDQG 300 GSGGEDYIFK SYSATSSRFM SPSIRVPPSD RYKVAPSIHV YNTAAQAAAA AAADLSDSDA 360 LIQAPNIRGS ESPIILNKDD PMVSAVPAAA MAISSCDSVS PGPSTPSGEE EESSSFWSYF 420 DQALCAVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 57 | 113 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002968096.1 | 0.0 | ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | D8RAN8 | 0.0 | D8RAN8_SELML; Uncharacterized protein | ||||
STRING | EFJ30350 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-11 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | 409196 |
Entrez Gene | 9631183 |
Publications ? help Back to Top | |||
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