PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408928

Common Name

SELMODRAFT_408928

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 423aa MW: 46215.5 Da PI: 5.8125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408928	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	281	313	17	53
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 s++e L+ l+P++ s+ l+ ++Le A++Y+k 408928 281 DSRLELLQHLIPHS----SRQLDEEQVLEVAIDYVKR 313 6899*******9....899***********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MARDPAYDLS RGFTSPCDWA ASFAKNESQA LAGFGVARKF QSSRLQQQPL PLRSIFTDST 60 VPTLARLANS PATRDDGANE ICARNGAPSS ANPQDPIDGL DLGQRPEATS ESGWTAYLDI 120 SVDWNAYNSL SRHLIRPGSI DGGGSMEDEW REDSSMESDA SSGPEQPELL RKEGLRRNAL 180 RGKRKSAAVR ETNPCCVVRE GDNDLDDTCQ SNLSCESVSD DPRPARRRCK RSRVGDDHQP 240 ALSRPPQVVD EHSDENEVEV EAGEAEISSP PSVNIHEKAV DSRLELLQHL IPHSSRQLDE 300 EQVLEVAIDY VKRQGHLHVP TVNGGGNDNM TQRSVLLYDA LLLLLSSLYQ CQIYTCLLFS 360 CMTTPHTKQC KRKFRKPAIH PGSHACISIN NIPNKVGMMK QYLLEGREAG GAGQGGGAMK 420 GI*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MARDPAYDLS RGFTSPCDWA ASFAKNESQA LAGFGVARKF QSSRLQQQPL PLRSIFTDST  60
VPTLARLANS PATRDDGANE ICARNGAPSS ANPQDPIDGL DLGQRPEATS ESGWTAYLDI  120
SVDWNAYNSL SRHLIRPGSI DGGGSMEDEW REDSSMESDA SSGPEQPELL RKEGLRRNAL  180
RGKRKSAAVR ETNPCCVVRE GDNDLDDTCQ SNLSCESVSD DPRPARRRCK RSRVGDDHQP  240
ALSRPPQVVD EHSDENEVEV EAGEAEISSP PSVNIHEKAV DSRLELLQHL IPHSSRQLDE  300
EQVLEVAIDY VKRQGHLHVP TVNGGGNDNM TQRSVLLYDA LLLLLSSLYQ CQIYTCLLFS  360
CMTTPHTKQC KRKFRKPAIH PGSHACISIN NIPNKVGMMK QYLLEGREAG GAGQGGGAMK  420
GI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528710.1	0.0	transcription factor BHLH089
TrEMBL	D8R8X3	0.0	D8R8X3_SELML; Uncharacterized protein
STRING	EFJ31051	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	408928
Entrez Gene	9631056

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]